TCONS_00004514-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004514-protein
Unique Name	TCONS_00004514-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	922

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004514-protein ID=TCONS_00004514-protein|Name=TCONS_00004514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=922bp
MTKLSIATFLFVILTLNFYNAEAAVANGTTPDNCARAVTQCRDGIALPVW
ATPGNNDGKAWIAARAFVYLVVMFYFFLGISIISDRFMASIEIITSQEKE
ITIKDRVTGKKQVVTVKIWNETVSNLTLMALGSSAPEILLSVIEIIGRGF
KAGELGPSTVVGSAAFNLFMITAVCVSVLPGEDIRRIKHLRVFAFTASCS
VLAYVWMYCILSVFSPGEIEVWEGIVTLLCFPGMVGTAFAIDVKMNFYRF
IRKKIRKTKKNGHTVVQTGDGDVLAIAVKDGNQENNDKNHVDFDKDIELL
AFKSGDDPEQHMNEKKRIAMEAYHRARAKNPDADASTLQHLVEQENLKLQ
HKSRAFYRIQATHRMTGQGNILRLKTSAEDKKNSKEAALQAEIREMNENV
AKAGIKGTCVYFHPSEYTVVESCGTCYVTVVRVGERLFDTVYVDYETVQG
TAEEGSDYEPAKGTLCFAPGDNSKTISINIIDDDIFELDEYFHVQLTGIR
SENGKGDESTALGQPDKAMITILDDDYPGVFTLEHEKFEVMETVGMLTLR
IVRLIGARGIIRVPYHTEEGTAKGGGEDFEDIIGEIEFNDEETVKTIEIP
IVDGEEYEKHRVFNVVLGEPKIVHFEKTHISNLDTIENEEMRRILEAGKP
ALGEHKRCEVHIVECKEFKNTIDNMLVKANMANFLKSSSWMEQFKEAFEV
EAGGDDEDEDGSGEPVEPSYFDYVMHYLCLFWKVFFALVPPTDIWGGWGC
FVVAILMIGLLTTLTGDIASHFGCTVGLADSVVAISFVALGTSLPDTFAS
KVATINDETADSSIGNVTGSNSVNVFLGIGLAWSVAAIYHAANGDKFEVD
PGALGFSVMVFCVEALICIGIMMYRRFNPNIGAELGGPKKARYITSSVCA
GLWIIYIIMSSLQTYCHINPGF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002539	XLOC_002539	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004514	TCONS_00004514	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004836	Na_Ca_Ex
IPR003644	Calx_beta
IPR004837	NaCa_Exmemb
IPR032452	Na_Ca_Ex_C-exten

Vocabulary: **Molecular Function**
Term	Definition
GO:0005432	calcium:sodium antiporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006816	calcium ion transport
GO:0007154	cell communication
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0007154	cell communication
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005432	calcium:sodium antiporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 379..406
None	No IPR available	GENE3D	2.60.40.1740		coord: 255..522 e-value: 0.0012 score: 18.6
None	No IPR available	SUPERFAMILY	141072	CalX-like	coord: 410..528
None	No IPR available	SUPERFAMILY	141072	CalX-like	coord: 529..672
IPR004836	Sodium/calcium exchanger protein	PRINTS	PR01259	NACAEXCHNGR	coord: 765..776 score: 71.05 coord: 752..764 score: 63.97 coord: 778..790 score: 68.42 coord: 791..804 score: 82.71
IPR004836	Sodium/calcium exchanger protein	TIGRFAM	TIGR00845	TIGR00845	coord: 14..919 e-value: 0.0 score: 1148.6
IPR003644	Na-Ca exchanger/integrin-beta4	SMART	SM00237	NIbeta_1	coord: 399..497 e-value: 4.8E-31 score: 119.1 coord: 518..618 e-value: 1.3E-31 score: 121.0
IPR003644	Na-Ca exchanger/integrin-beta4	PFAM	PF03160	Calx-beta	coord: 409..497 e-value: 7.9E-27 score: 93.3 coord: 519..617 e-value: 1.9E-20 score: 72.8
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 748..910 e-value: 4.6E-23 score: 81.8 coord: 69..235 e-value: 2.3E-25 score: 89.2
IPR032452	Sodium/calcium exchanger domain, C-terminal extension	PFAM	PF16494	Na_Ca_ex_C	coord: 246..380 e-value: 1.0E-23 score: 84.1

Blast

[Close]

BLAST of TCONS_00004514-protein vs. Swiss-Prot (Human)
Match: NAC1 (Sodium/calcium exchanger 1 OS=Homo sapiens GN=SLC8A1 PE=1 SV=3)

HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 467/983 (47.51%), Postives = 619/983 (62.97%), Query Frame = 0

Query:    4 LSIATFLFVILTLNFYNAEAAVAN------GTTPDNCARAVTQCRDGIALPVWATPGNNDGKAWIAARAFVYLVVMFYFFLGISIISDRFMASIEIITSQEKEITIKDRVTGKKQVVTVKIWNETVSNLTLMALGSSAPEILLSVIEIIGRGFKAGELGPSTVVGSAAFNLFMITAVCVSVLPGEDIRRIKHLRVFAFTASCSVLAYVWMYCILSVFSPGEIEVWEGIVTLLCFPGMVGTAFAIDVKMNFYRFIRKKIRKTKKNGHTVVQTGDGDVLAIAVK-DGNQENNDKNHVD--FDKDIELLAFKSGDDPEQHMNEKKRIAMEAYHRARAKNPDADASTLQHLVEQENLKLQHKSRAFYRIQATHRMTGQGNILRLKTSAEDKKNSKEAALQAEIREMNENVAKAGIKGTCVYFHPSEYTVVESCGTCYVTVVRVGERLFDTVYVDYETVQGTAEEGSDYEPAKGTLCFAPGDNSKTISINIIDDDIFELDEYFHVQLTGIR-----SENGKGDES-----TALGQPDKAMITILDDDYPGVFTLEHEKFEVMETVGMLTLRIVRLIGARGIIRVPYHTEEGTAKGGGEDFEDIIGEIEFNDEETVKTIEIPIVDGEEYEKHRVFNVVLGEPKIVH---------------------------FEKTH------ISNLDTI------------ENEEMRRILEAGKPALGEHKRCEVHIVECKEFKNTIDNMLVKANMANFLKSSSWMEQFKEAFEVEAGGDDEDEDGSGEPVEPSYFDYVMHYLCLFWKVFFALVPPTDIWGGWGCFVVAILMIGLLTTLTGDIASHFGCTVGLADSVVAISFVALGTSLPDTFASKVATINDETADSSIGNVTGSNSVNVFLGIGLAWSVAAIYHAANGDKFEVDPGALGFSVMVFCVEALICIGIMMYRRFNPNIGAELGGPKKARYITSSVCAGLWIIYIIMSSLQTYCHINPGF 922
             S+   L V ++L F + +  +A       G     C  +   C+ G+ LP+W     + G     ARA VY V M Y FLG+SII+DRFM+SIE+ITSQEKEITIK +  G+    TV+IWNETVSNLTLMALGSSAPEILLSVIE+ G  F AG+LGPST+VGSAAFN+F+I A+CV V+P  + R+IKHLRVF  TA+ S+ AY W+Y ILSV SPG +EVWEG++T   FP  V  A+  D ++ FY+++ K+ R  K+ G  +   GD       ++ DG   N   +HV+   D  + L   +   D E+   E  RI  E     + K+PD +   L  L   + L  Q KSRAFYRIQAT  MTG GNIL+   + + +K      +  E+ E N+ V+K       ++F    Y  +E+CGT  +T++R G  L +TV+VD+ T  GTA  GSDYE  +GT+ F PGD  K I + IIDDDIFE DE F V L+ ++     SE+G  + +       LG P  A +TI DDD+ G+FT E     V E++G++ ++++R  GARG + VPY T EGTA+GGGEDFED  GE+EF ++E VKTI + ++D EEYEK++ F + +GEP++V                            F K H      +S + TI            + EE RRI E G+P LGEH + EV I E  EFK+T+D ++ K N+A  + ++SW EQF EA  V AG DD+D++   E + PS FDYVMH+L +FWKV FA VPPT+ W GW CF+V+ILMIGLLT   GD+ASHFGCT+GL DSV A+ FVALGTS+PDTFASKVA   D+ AD+SIGNVTGSN+VNVFLGIG+AWS+AAIYHAANG++F+V PG L FSV +F + A I +G+++YRR  P IG ELGGP+ A+ +TS +   LW++YI  SSL+ YCHI  GF
Sbjct:   13 FSMGFHLLVTVSLLFSHVDHVIAETEMEGEGNETGECTGSY-YCKKGVILPIWEPQDPSFGDK--IARATVYFVAMVYMFLGVSIIADRFMSSIEVITSQEKEITIK-KPNGETTKTTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHNFTAGDLGPSTIVGSAAFNMFIIIALCVYVVPDGETRKIKHLRVFFVTAAWSIFAYTWLYIILSVISPGVVEVWEGLLTFFFFPICVVFAWVADRRLLFYKYVYKRYRAGKQRGMIIEHEGDRPSSKTEIEMDGKVVN---SHVENFLDGALVLEVDERDQDDEEARREMARILKE----LKQKHPDKEIEQLIELANYQVLSQQQKSRAFYRIQATRLMTGAGNILKRHAADQARKAVSMHEVNTEVTE-NDPVSK-------IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGDTQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSTLACLGSPSTATVTIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTITGKYLFGQPVFRKVHAREHPILSTVITIADEYDDKQPLTSKEEEERRIAEMGRPILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWREQFIEAITVSAGEDDDDDECGEEKL-PSCFDYVMHFLTVFWKVLFAFVPPTEYWNGWACFIVSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANGEQFKVSPGTLAFSVTLFTIFAFINVGVLLYRR-RPEIGGELGGPRTAKLLTSCLFVLLWLLYIFFSSLEAYCHIK-GF 973

The following BLAST results are available for this feature:

BLAST of TCONS_00004514-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NAC1	0.000e+0	47.51	Sodium/calcium exchanger 1 OS=Homo sapiens GN=SLC8...	[more]

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TCONS_00004514-protein (polypeptide) - C. hemisphaerica