TCONS_00004519-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004519-protein
Unique NameTCONS_00004519-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004519-protein ID=TCONS_00004519-protein|Name=TCONS_00004519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MSKATKRKHVTKEILEDYYVPEDDEIIVKIVTGRGNNLHEVMTPKGEQYL
VSMPTKFRRNVWVKRGDFVVVSPIKEGVKVQGEIVYILYAKQIKYLKSEK
IWPEAFYEDSGKDSAKNGKNEGPARNIADENLDESEESESDNDDDLFVNP
NHRPIFRNDDESEESDSSEEEDFEESEDDQNGNSLRHHNDEKTFVDDEGE
SNVKEKMKTVKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002541XLOC_002541Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004519TCONS_00004519Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 20..103
e-value: 8.6E-30
score: 115.0
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 24..86
e-value: 4.0E-19
score: 68.1
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 5..89
score: 11.01
NoneNo IPR availableGENE3D2.40.50.140coord: 2..146
e-value: 1.1E-40
score: 138.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..212
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 5..106

Blast
[Close]
BLAST of TCONS_00004519-protein vs. Swiss-Prot (Human)
Match: EIF1A (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.320e-42
Identity = 74/153 (48.37%), Postives = 105/153 (68.63%), Query Frame = 0 
Query:    1 MSKATKRKHVTKEILEDYYVPEDDEIIVKIVTGRGNNLHEVMTPKGEQYLVSMPTKFRRNVWVKRGDFVVVSPIKEGVKVQGEIVYILYAKQIKYLKSEKIWPEAFYEDSGKDSAKNGKNEGPARNIADENLDESEESESDNDDDLFVNPNHR 153
            MS+ATKRKHV KE+L ++ VP D + IV+++   GNNLHEV T +G+++LVSMP+K+R+N+W+KRGDF++V PI+EG KV+ EI ++L    ++ L+ E  WPEAF E + K    N +N      +  E     EES S++D DLFVN N R
Sbjct:    1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH---NNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRR 150
The following BLAST results are available for this feature:
BLAST of TCONS_00004519-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF1A3.320e-4248.37Probable RNA-binding protein EIF1AD OS=Homo sapien... [more]
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