TCONS_00004571-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004571-protein
Unique NameTCONS_00004571-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1075

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004571-protein ID=TCONS_00004571-protein|Name=TCONS_00004571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1075bp
MPDKDTAKKDAASKICAQLKDMGELTKEHLLPVDHREKYTDLDQDANGKT
AEGTRKNRSCYTRNIPKLLQYDGNLLEGDFHLYAIEMTLTFPYDKPSATA
TWPLWYAAQREGFGLILPAKDFPKFQPVKLYTRSGEITVTLRKLESPSFQ
LSTKHQESIERFSQYMSTDFYKQYIPEDLTLYRDDTDFEISKAFVVILTP
KAMSQIQRDVFRFKSQPIDFMQMDTVSKSLNLNQIPDPNQQQVIRKTYLD
DEKMNRRPYYVVEPSTKIAGDFMEGNKTFAHYYQKRYNRPVDVNSLLMQV
VPVSRSVNYHEVETMRDSKKESGRHKEELVPELCQVVSSLSSQLHMQAIL
FPYFLYRFECGLNADEFRNKILSYMDLPDAGEMEMNQGSSASEIQKMRLL
LHPRFPKSPAPSEIFEALTTRQALFDVNLERLEMLGDAFLKQAVSIFLFF
KHPTYDEGRLTLIRKQQISNKNLRNIAVQLNAASYVNNSHFGDTNRGSDN
KNPLTVWLPPAFKRSIPDEPMEEDTPEKELPFSSPYSYQVVQDKSLADCM
EALIGAFFQSAGVKDCLVFMNDVLKIPTMFKGIHPDEHNSNRIQYGTRSC
YSDFPKAASAVRDPRLRGDSEEVGNLRQIKXFFKHPTYDEGRLTLIRKQQ
ISNKNLRNIAVQLNAASYVNNSHFGDTNRGSDNKNPLTVWLPPAFKRSIP
DEPMEEDTPEKELFSSPYSYQVVQDKSLADCMEALIGAFFQSAGVKDCLV
FMNDVLKIPTMFKGIDLDEHNSNRIQYGTRSCYSDFPKAASAVRDPRLRG
DSEEVGNLRQIKEVEDLYQKGRLSDVEHTIGYTFKDKSHLIQATTHLSYI
GNAVTGCYQEYEFLGDAILDFLVTLHVFASSESLSPGKLTSIKSSLVNNN
VFSFHIIRLGLHKYLSHHSPALVNVLNEFTGHVTDADGQLYPQLYKSPFI
VAPPGSNCGLISPKVFGDLLESLAGAVFLDSGMDLMVVWKVFYPIMRETI
EAYIEDTPLNPKREMHEKFPNLKFEDPEESQSEDKEMTQCKVVYDGGEQI
GSGKNKKTAQTMACYLALQKLKAEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002565XLOC_002565Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004571TCONS_00004571Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
IPR003100PAZ_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0005515 protein binding
molecular_function GO:0004525 ribonuclease III activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 599..767
e-value: 0.049
score: 2.1
coord: 838..1005
e-value: 1.5E-20
score: 84.3
coord: 412..584
e-value: 1.8E-20
score: 84.0
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 810..1007
e-value: 2.1E-37
score: 127.6
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 628..761
e-value: 4.0E-17
score: 61.8
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 632..744
e-value: 5.5E-13
score: 49.3
coord: 430..562
e-value: 1.0E-22
score: 80.6
coord: 859..982
e-value: 1.3E-18
score: 67.4
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 381..576
e-value: 6.1E-32
score: 109.7
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 416..562
score: 23.648
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 823..982
score: 30.164
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 632..744
score: 13.135
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 840..1005
e-value: 1.95464E-28
score: 111.551
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 414..576
e-value: 7.183E-24
score: 98.4538
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 632..758
e-value: 2.36589E-11
score: 61.4747
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 536..574
coord: 412..487
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 631..670
coord: 718..756
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 956..1004
coord: 823..916
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 1011..1072
e-value: 0.0016
score: 27.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 1007..1073
score: 8.518
NoneNo IPR availableGENE3D3.30.160.20coord: 1..43
e-value: 0.07
score: 13.1
NoneNo IPR availableGENE3D2.170.260.10coord: 239..339
e-value: 2.1E-8
score: 33.9
NoneNo IPR availableGENE3D3.30.160.20coord: 1008..1075
e-value: 1.8E-6
score: 27.6
NoneNo IPR availableCDDcd00048DSRMcoord: 1010..1071
e-value: 5.57338E-6
score: 44.1855
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 1003..1073
IPR003100PAZ domainPFAMPF02170PAZcoord: 258..357
e-value: 1.2E-5
score: 25.1

Blast
[Close]
BLAST of TCONS_00004571-protein vs. Swiss-Prot (Human)
Match: DICER (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.157e-46
Identity = 127/390 (32.56%), Postives = 200/390 (51.28%), Query Frame = 0 
Query:  707 DTPEKELFSSPYSYQVVQDKSLADCMEALIGAFFQSAGVKDCLVFMNDV-LKIPTMFKGIDLDE------HNSNRIQYG---TRSCYSDFPKAASAVRD---------PRLRGDSEEVGNLRQIKEVEDLYQKGRLSDVEHTIGYTFKDKSHLIQATTHLSYIGNAVTGCYQEYEFLGDAILDFLVTLHVFASSESLSPGKLTSIKSSLVNNNVFSFHIIRLGLHKYLSHHSPALVNVLNEFTGHVTDADGQ--LYPQLYKSPFIVAPPGSNCGLISPKVFGDLLESLAGAVFLDSGMDLMVVWKVFYPIMRETIEAYIEDTPLNPKREMHEKFPNLKFEDPEESQSEDKEMTQCKVVYDGGEQIGSGKNKKTAQTMACYLALQKLKAEE 1075
            DT ++ +    ++ Q + DKS+ADC+EAL+G +  S G +   +F+  + LK+  + K  D ++       N N  Q     + +  S     +S ++D         PR   D  +       K +  L       + E  I Y FK+K++L+QA TH SY  N +T CYQ  EFLGDAILD+L+T H++      SPG LT ++S+LVNN +F+   ++   HKY    SP L +V+++F     + +    +  +L +S            +  PK  GD+ ESLAGA+++DSGM L  VW+V+YP+MR  IE +  + P +P RE+ E  P      P E   + K     +VV  G  + G G++ + A++ A   AL+ LKA +
Sbjct: 1538 DTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDAD-----KTLNHLISG--FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEE---KEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFK-GVGRSYRIAKSAAARRALRSLKANQ 1916

HSP 2 Score: 88.9669 bits (219), Expect = 9.982e-18
Identity = 113/416 (27.16%), Postives = 171/416 (41.11%), Query Frame = 0 
Query:    7 AKKDAASKICAQLKDMGELTKEHLLPVDHRE-KYTDLDQDANGKTAE-----GTRKNRSCYTRNIPKLLQYDGNLLEGDFHLYAIEMTLTFPYDKPSATATWPLWYAAQREGFGLILPAKDFPKFQPVKLYTRSGEITVTLRKLESPSFQLSTKHQESIERFSQYMSTDFYKQYIPEDLTLYRDDTDFEISKAFVVILTPKAMSQIQRDVFRFKSQPIDFMQMDTVSKSLNLNQIPDPN--------------QQQVIRKTYLDDEKMNRRPYYVVE------PSTKIAGDFMEGNKTFAHYYQKRYNRPV-DVNSLLMQVVPVSRSVNYHEVETM--------------RDSKKESGRHKEELVPELCQVVSSLSSQLHMQAILFPYFLYRFECGLNADEFRNKILSYMDLPDAG 381
            A++  A   C +L  +GEL  +HL+PV     KY +     + +        G+ K R CY + IP+ L+      +   +LY I M LT P           L+          IL AK  P+     +YTRSGE+T+++ +L+   F LS +  E I R  QY+ +   +   P  L     D D     A+ V+           D        IDF  M+ + KS     IP                 Q  VI   Y + ++ +R  +YV +      P +K      E   TFA YY+ +YN  + ++N  L+ V   S  +N      +              R +K ES ++K+ LVPELC  +  + + L  +A+  P  LYR  C L A+E R +  S     DAG
Sbjct:  690 AERVVALICCEKLHKIGEL-DDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISI-ELKKSGFMLSLQMLELITRLHQYIFSHILRLEKPA-LEFKPTDAD----SAYCVLPLNVVNDSSTLD--------IDFKFMEDIEKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHR--FYVADVYTDLTPLSKFPSPEYE---TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELC-AIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAS-----DAG 1079
The following BLAST results are available for this feature:
BLAST of TCONS_00004571-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DICER1.157e-4632.56Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 P... [more]
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