TCONS_00004615-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004615-protein
Unique NameTCONS_00004615-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004615-protein ID=TCONS_00004615-protein|Name=TCONS_00004615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAAVCQLSTACSYESKPLFAQGFTTKSWMKNVEVVGPPEAGAFKKRPAKQ
TQFRRFYDRGDLPIALEHDTKGNKIAWKVEIEKLDYHHYLPMFFEGLRET
EHPYEFFARQGVHDMLEHGGSKILPVVPQLILPIRDALDTRDLQVVCTTL
KVLQHLVISGEMVGEALVPYYRQILPVLNIFKSKNLNSGDGIDYSQQRRE
NIGDLIQETLEAFERHGGEDAFINIKYMIPTYESCLLN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002602XLOC_002602Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004615TCONS_00004615Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR019399Parkin_co-regulated_protein
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 81..216
e-value: 2.5E-5
score: 22.5
IPR019399Parkin co-regulated proteinPFAMPF10274ParcGcoord: 51..234
e-value: 1.2E-84
score: 282.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 86..186

Blast
[Close]
BLAST of TCONS_00004615-protein vs. Swiss-Prot (Human)
Match: PACRG (Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.348e-127
Identity = 174/260 (66.92%), Postives = 201/260 (77.31%), Query Frame = 0 
Query:   18 LFAQGFTTKSWMKNVEVVGPPEAGAFKKRPAKQTQFRRFYDRGDLPIALEHDTKGNKIAWKVEIEKLDYHHYLPMFFEGLRETEHPYEFFARQGVHDMLEHGGSKILPVVPQLILPIRDALDTRDLQVVCTTLKVLQHLVISGEMVGEALVPYYRQILPVLNIFKSKN---------------------------------------LNSGDGIDYSQQRRENIGDLIQETLEAFERHGGEDAFINIKYMIPTYESCLLN 238
            L ++GFT K+ MKN  V GPP AGAFK+RP K T FR+FY+RGD PIALEHD+KGNKIAWKVEIEKLDYHHYLP+FF+GL E   PYEFFARQG+HDMLEHGG+KILPV+PQLI+PI++AL+ R+ QV+C TLKVLQHLV+S EMVG+ALVPYYRQILPVLNIFK+ N                                       +NSGDGIDYSQQ+RENIGDLIQETLEAFER+GGE+AFINIKY++PTYESCLLN
Sbjct:   37 LVSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
The following BLAST results are available for this feature:
BLAST of TCONS_00004615-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACRG1.348e-12766.92Parkin coregulated gene protein OS=Homo sapiens GN... [more]
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