TCONS_00004688-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004688-protein
Unique NameTCONS_00004688-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004688-protein ID=TCONS_00004688-protein|Name=TCONS_00004688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=830bp
SAPLYVDITKTVTKAGHDPESEEHGKVYIGKIPIMLRSSFCVLKGQTDRD
LCELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFQKKDSKYAYTCE
IRSCLEQSSRPTSTMFISMLARGGGGAKKGSIGQRIIATIPYIRQEIPIM
IVFRALGFVSDRDILEHIIYDFNDTEMMEMVKPSLDEAFVVQEQNVALNF
IGTRGARPGVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMVH
RILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQ
KFIDKGKDFRMDLAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVL
NRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSHWGMICPAETPEGHAV
GLVKNLALMAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDSTKIFVN
GCWVGIHRDPEQLIITLRRLRRQMDIIVSEVSMVRDIRDKEIRIYTDAGR
VCRPLLIVENQKLLLKKSHIEQLKEREYNDFGWADLVGKGVVEYVDVNEE
ETSMIAMSIENISFEDQYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPR
NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRE
LPAGINSVVAIASYTGYNQEDSVLMNFSAINRGLYRSVFYRSYRDEESRK
GLDQEERFEKPRRDETAGMRNAIYDKLDEDGLIAPGSRVSGEDVIIGKTC
TLPEDEDELDSQTRHYTKRDASTFLRASETGIVDQVMLTINEEGYKFCKI
KVRSVRTPQIGDKFASRHGQKGTCGITYXW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002642XLOC_002642Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004688TCONS_00004688Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007646RNA_pol_Rpb2_4
IPR007644RNA_pol_bsu_protrusion
IPR007642RNA_pol_Rpb2_2
IPR007120DNA-dir_RNA_pol_su2_6
IPR014724RNA_pol_RPB2_OB-fold
IPR007645RNA_pol_Rpb2_3
IPR007647RNA_pol_Rpb2_5
IPR007121RNA_pol_bsu_CS
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..118
e-value: 1.4E-12
score: 46.8
coord: 133..623
e-value: 1.0E-72
score: 244.4
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..828
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 447..509
e-value: 1.1E-23
score: 83.1
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 1..321
e-value: 7.9E-40
score: 136.4
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 81..274
e-value: 2.5E-55
score: 186.9
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 586..827
e-value: 1.4E-62
score: 211.9
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 624..807
e-value: 1.9E-45
score: 153.5
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 348..412
e-value: 1.8E-25
score: 88.8
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 533..579
e-value: 4.4E-18
score: 65.5
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 811..823
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 1..828
e-value: 0.0
score: 729.752

Blast
[Close]
BLAST of TCONS_00004688-protein vs. Swiss-Prot (Human)
Match: RPB2 (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 1484.55 bits (3842), Expect = 0.000e+0
Identity = 695/829 (83.84%), Postives = 771/829 (93.00%), Query Frame = 0 
Query:    1 SAPLYVDITKTVTKAGHDPESEEHGKVYIGKIPIMLRSSFCVLKGQTDRDLCELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFQKKDSKYAYTCEIRSCLEQSSRPTSTMFISMLARGGGGAKKGSIGQRIIATIPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFNDTEMMEMVKPSLDEAFVVQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDKGKDFRMDLAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDSTKIFVNGCWVGIHRDPEQLIITLRRLRRQMDIIVSEVSMVRDIRDKEIRIYTDAGRVCRPLLIVENQKLLLKKSHIEQLKEREYNDFGWADLVGKGVVEYVDVNEEETSMIAMSIENISFED-QYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRELPAGINSVVAIASYTGYNQEDSVLMNFSAINRGLYRSVFYRSYRDEESRKGLDQEERFEKPRRDETAGMRNAIYDKLDEDGLIAPGSRVSGEDVIIGKTCTLPEDEDELDSQTRHYTKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVRTPQIGDKFASRHGQKGTCGITY 828
            SAPLYVDITKTV K G +    +H K +IGKIPIMLRS++C+L G TDRDLCELNECPLDPGGYF+INGSEKVLIAQEKMATNTVYVF KKDSKYAYT E RSCLE SSRPTST+++SMLARGG GAKK +IGQRI+AT+PYI+QE+PI+IVFRALGFVSDRDILEHIIYDF D EMMEMVKPSLDEAFV+QEQNVALNFIG+RGA+PGVTKEKRIKYA+E+LQKEMLPHVG SDFCETKKAYFLGYMVHR+LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG+FKNL+KEVR+YAQKFID+GKDF ++LAIKT+ I+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN+ WGM+CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEW+MENLEEISP+AI D+TKIFVNGCWVGIH+DPEQL+ TLR+LRRQMDIIVSEVSM+RDIR++EIRIYTDAGR+CRPLLIVE QKLLLKK HI+QLKEREYN++ W DLV  GVVEY+D  EEET M+AM+ +++  ++  Y  TYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSM++L+FRELPAGINS+VAIASYTGYNQEDSV+MN SA++RG +RSVFYRSY+++ES+KG DQEE FEKP R+   GMR+AIYDKLD+DGLIAPG RVSG+DVIIGKT TLPE+EDEL+S  R YTKRD STFLR SETGIVDQVM+T+N+EGYKFCKI+VRSVR PQIGDKFASRHGQKGTCGI Y
Sbjct:  121 SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
The following BLAST results are available for this feature:
BLAST of TCONS_00004688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB20.000e+083.84DNA-directed RNA polymerase II subunit RPB2 OS=Hom... [more]
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