TCONS_00004724-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004724-protein
Unique NameTCONS_00004724-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004724-protein ID=TCONS_00004724-protein|Name=TCONS_00004724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MSNMQVHQSRTTLEENFVFGSPPLLNGFSYNSCRAQESANQDCNYYESGQ
TDMSYCHHPSKYGNSRTTYSGLPMKTGGANSSSMLDSLNQLYLNGNRPYH
NENSRKILEQAGLKMQQQQNFNNNNSLNSSPKNFELVFKKRKDLRVLKSV
LSTERFRKVTMMFGGGDEHGREIVESVHNSMRKSNTGSMCCLFCNTESQV
YENFPIVDGTLFLSPVKLSQNCISFVDDKVSDGPSASPTPQRHMCFICVS
CLEGKPNKLQCSSCYSPWNGSFFQVGTLYSYNILSAIPCCEARVKCKNCH
KSIIDWNNGDATTLFFSHFSSSAVCPHCNVEDFHYVKPLDTLRKLNFW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002672XLOC_002672Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004724TCONS_00004724Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031947Headcase_mid
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031947Headcase, middle domainPFAMPF16002Headcasecoord: 136..339
e-value: 1.3E-47
score: 161.7

Blast
[Close]
BLAST of TCONS_00004724-protein vs. Swiss-Prot (Human)
Match: HDC (Headcase protein homolog OS=Homo sapiens GN=HECA PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.321e-34
Identity = 75/213 (35.21%), Postives = 114/213 (53.52%), Query Frame = 0 
Query:  138 FKKRKDLRVLKSVLSTERFR--KVTMMFGGGDEHGREIVESVHNSMRKSNTGSMCCLFCNTESQVYENFPIVDGTLFLSPVKLSQNCISFVDDKVSDGPSASPTPQRHMCFICVSCLEGKPNKLQCSSCYSPWNGSFFQVGTLYSYNILSAIPCCEARVKCKNCHKSIIDWNNGDATTLFFSHFSSSAVCPHCNVEDFHYVKPLDTLRKLNFW 348
            F +R DL  L + +   +     V M        G ++ + +  ++  S+   + C  C+    V+E FP+VDGTLFLSP        S  D+   D P        H+  +CV CLEG  +K+ C  C S W+GS+ Q+GT+Y+Y+IL+A PCC+AR+ CK+C K +ID   G     +FS +S+   CPHC   D+H+VKP  + + L  +
Sbjct:  343 FLRRLDLSELLTHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCHRALPVFEQFPLVDGTLFLSP--------SRHDEIEYDVPCHLQGRLMHLYAVCVDCLEGV-HKIICIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVIDVRIG---MQYFSEYSNVQQCPHCGNLDYHFVKPFSSFKVLEAY 543
The following BLAST results are available for this feature:
BLAST of TCONS_00004724-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDC9.321e-3435.21Headcase protein homolog OS=Homo sapiens GN=HECA P... [more]
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