TCONS_00004748-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004748-protein
Unique NameTCONS_00004748-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004748-protein ID=TCONS_00004748-protein|Name=TCONS_00004748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MYQQQQIMMNNFGDQLDYYGSDGESVISDTMVNGQVSPSRSDWSPVPQCN
TWNDYPDQQDFSNIFTDALTNGTNNKINFNNNTNTNQQFEINTDTPTCSQ
PLYPTYGNINNAPNLNKESMPASPLTYETMQNPIYPMNNIQQHPCFQTPI
YNREYSTDLNNYLPENMLLNNTSNMNDDFNNVRMDDLLNTGYSTNNPFNN
KEMKDTPIFSMNQSTMNNKRHELFLQMIKQQQNKVSMESLSIQSSPAPLT
PSSDWDNIPSPVSEYDMKPLHDTINKPTKPSTTALKPKVKKPRKSYAAKT
GKPRLFRFLKDILEDPNQYKCIEWVNKSTGTFKFLDSSEVARLWGHRKNK
PAMKYENFARSLRTYIAKGILKKPRNKLVYCFAQPDTE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002686XLOC_002686Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004748TCONS_00004748Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000418Ets domainPRINTSPR00454ETSDOMAINcoord: 328..346
score: 46.36
coord: 303..316
score: 36.74
coord: 347..365
score: 53.18
coord: 365..383
score: 29.39
IPR000418Ets domainSMARTSM00413etsneu2coord: 302..387
e-value: 7.4E-29
score: 111.9
IPR000418Ets domainPFAMPF00178Etscoord: 305..382
e-value: 7.4E-27
score: 93.5
IPR000418Ets domainPROSITEPS50061ETS_DOMAIN_3coord: 303..383
score: 20.443
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 287..388
e-value: 6.5E-28
score: 96.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 293..384

Blast
[Close]
BLAST of TCONS_00004748-protein vs. Swiss-Prot (Human)
Match: SPDEF (SAM pointed domain-containing Ets transcription factor OS=Homo sapiens GN=SPDEF PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.555e-21
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:  300 TGKP-RLFRFLKDILEDPNQY-KCIEWVNKSTGTFKFLDSSEVARLWGHRKNKPAMKYENFARSLRTYIAKGILKKP--RNKLVYCFAQP 385
            +G+P  L++FLK++L  P+ Y + I W+NK  G FK  DS++VARLWG RKN+PAM Y+  +RS+R Y  KGI++KP    +LVY F  P
Sbjct:  245 SGQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP 334
The following BLAST results are available for this feature:
BLAST of TCONS_00004748-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPDEF1.555e-2150.00SAM pointed domain-containing Ets transcription fa... [more]
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