TCONS_00004760-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004760-protein
Unique NameTCONS_00004760-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004760-protein ID=TCONS_00004760-protein|Name=TCONS_00004760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MAPRACTPCQAGYFLSKMCTSSSDTVCRLCADNFFNPNVGFSKTCNRCSP
CKRNEHIDKPCTPISDVVCKCEKQNHIYDKFKPCQACPKGTVVINNKCAN
ETSFFTTRQPTTNNNSQVHSKVIALSIGLGVIAIVVSIIVALCCYYSRRR
RRHLPPIDDAPSEANEVETNEKLHIKAPRSPPKENVYSAIPLNVKDDKRI
CSHQLPFSLVHELGGLLAASHSKNYKHLADKLGYKYSFIKRLESSEDPVE
ALLDDYVTGENPTKEQLYSSLLAIGRPDAAKVVMDEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002694XLOC_002694Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004760TCONS_00004760Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001368TNFR/NGFR_Cys_rich_reg
IPR000488Death_domain
IPR011029DEATH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001368TNFR/NGFR cysteine-rich regionSMARTSM00208TNFR_3coord: 30..69
e-value: 4.8E-4
score: 29.4
coord: 3..27
e-value: 89.0
score: 0.7
IPR001368TNFR/NGFR cysteine-rich regionPFAMPF00020TNFR_c6coord: 5..27
e-value: 3.6E-4
score: 20.8
coord: 30..69
e-value: 1.5E-6
score: 28.4
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 29..69
score: 10.579
NoneNo IPR availableGENE3D2.10.50.10coord: 2..56
e-value: 2.2E-15
score: 56.1
NoneNo IPR availableGENE3D2.10.50.10coord: 57..88
e-value: 3.3E-5
score: 23.4
NoneNo IPR availableGENE3D1.20.5.100coord: 109..153
e-value: 2.4E-4
score: 20.1
NoneNo IPR availableGENE3D1.10.533.10coord: 199..285
e-value: 4.7E-13
score: 48.9
NoneNo IPR availableCDDcd00185TNFRSFcoord: 6..91
e-value: 1.92844E-14
score: 65.6935
NoneNo IPR availableSUPERFAMILY57586TNF receptor-likecoord: 4..48
IPR000488Death domainPFAMPF00531Deathcoord: 218..285
e-value: 2.7E-7
score: 30.5
IPR000488Death domainPROSITEPS50017DEATH_DOMAINcoord: 224..287
score: 10.356
IPR011029Death-like domainSUPERFAMILY47986DEATH domaincoord: 204..283

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004760-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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