TCONS_00004915-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004915-protein
Unique Name	TCONS_00004915-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	926

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004915-protein ID=TCONS_00004915-protein|Name=TCONS_00004915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
MDIYNKKKTFIGKAAPLGYVAGLGRGASGFTTRSDIGPARDSSDAPDEAQ
IQQQMQQALKRKKDEDNEDLNESNYDEFAGYGGSLFSSGPYEKDDEEADK
VYDEIDKRMDDKRKEHREKKFKETVEKYRAERPKIQQQFSDLKRKLSDVS
ANEWATLPEVGDSRNKKMRNPRTERFTPVPDSVIKSALLAGQTSTSVNPM
EQFGGLNTPYPGMATPSTTDLDLNKIGEARKSLVGVKLDQASDSVSGQTV
VDPKGYLTDLQSLTPSSSGDIGDIKKARLLLKSVITTNQKHAPGWIAAAR
LEEVTGHIQKARNFIMKGTEACPKNEDVWLEAVRLQPKELSKGVVAQAIK
QLSQSVRLWIKAADLEDERAAQKRVFRKALENIPNSVRLWKAAVELEDPE
DARILLTRAVECCPQSVELWLALAHLETYENGRRVLNKARENIPTDRQIW
ITAAKLEEANGNTPLVDKIIERGVTSLSSNGVEINRELWIVDAEEADKAG
ATYTAQAIIRTVIGIGVEDEDRKHTWIEDAESCAVHSAYECARAIYAYAL
KTFPNKKSIWLRASYFEKNHGTRESLETLLQSAVKHCPKAEVLWLMGAKS
KWMAGDISAARNILSLAFQANPNSEEIWLAAVKLESENNEDERARQLLTK
ARMSAPTARVFMKSVRLEWVLGNLRQAKEMLKEALRKYDSFPKLWMMKGQ
LHEEEKDLYEATQAYRNGTKKCPTSIHLWILLAKLEEKQGNLTKARSVME
QARHRNPQTDELWLHSIRIEVRAKQLEFAKSLLAKAMQVCPSSGILWAES
IFMVSRPQRKTKSVDALKKCEHDPNVLLAVSKLFWSERKVTKAREWFQRT
VKIDPDFGDAWAYFYKFELQHGTEANQKSVLEKCTKSEPHHGAEWQVISK
STKNWRLKTKDILHQVARSLKSIENV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002781	XLOC_002781	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004915	TCONS_00004915	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR003107	HAT
IPR011990	TPR-like_helical_dom
IPR010491	PRP1_N
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	COILS	Coil	Coil	coord: 631..651
None	No IPR available	COILS	Coil	Coil	coord: 735..755
None	No IPR available	COILS	Coil	Coil	coord: 48..68
None	No IPR available	COILS	Coil	Coil	coord: 362..382
None	No IPR available	PFAM	PF13432	TPR_16	coord: 666..716 e-value: 0.003 score: 18.1
None	No IPR available	PFAM	PF14559	TPR_19	coord: 603..661 e-value: 2.1E-6 score: 28.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..100
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 692..725 e-value: 12.0 score: 14.3 coord: 824..857 e-value: 68.0 score: 7.7 coord: 292..325 e-value: 230.0 score: 3.0 coord: 726..759 e-value: 72.0 score: 7.5
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 824..857 score: 8.408
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 726..759 score: 6.756
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 692..725 score: 6.933
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 537..569 e-value: 7.9E-4 score: 28.7 coord: 605..637 e-value: 0.029 score: 23.5 coord: 706..738 e-value: 0.4 score: 19.7 coord: 774..806 e-value: 29.0 score: 12.0 coord: 571..603 e-value: 360.0 score: 4.0 coord: 740..772 e-value: 0.12 score: 21.5 coord: 672..704 e-value: 450.0 score: 3.3 coord: 272..304 e-value: 1.2 score: 18.2 coord: 367..399 e-value: 0.64 score: 19.1 coord: 400..429 e-value: 17.0 score: 13.8 coord: 639..670 e-value: 140.0 score: 7.0 coord: 430..459 e-value: 1.7 score: 17.7 coord: 838..870 e-value: 52.0 score: 10.2 coord: 306..338 e-value: 36.0 score: 11.3
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 814..915 e-value: 5.7E-7 score: 28.9 coord: 43..342 e-value: 4.0E-10 score: 39.1 coord: 649..714 e-value: 8.2E-11 score: 41.3 coord: 343..510 e-value: 5.3E-13 score: 48.5 coord: 715..813 e-value: 3.2E-15 score: 55.7
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 516..648 e-value: 2.9E-12 score: 46.0
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 272..444
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 396..494
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 515..688
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 689..922
IPR010491	PRP1 splicing factor, N-terminal	PFAM	PF06424	PRP1_N	coord: 15..166 e-value: 1.8E-53 score: 180.6
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 658..793 score: 15.593
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 523..658 score: 6.633
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 824..857 score: 7.947

Blast

[Close]

BLAST of TCONS_00004915-protein vs. Swiss-Prot (Human)
Match: PRP6 (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 1281.93 bits (3316), Expect = 0.000e+0
Identity = 630/938 (67.16%), Postives = 763/938 (81.34%), Query Frame = 0

Query:    6 KKKTFIGKAAPLGYVAGLGRGASGFTTRSDIGPARDSSDA-------PDEAQIQQQMQQALKRKKDEDNEDLNESNYDEFAGYGGSLFSSGPYEKDDEEADKVYDEIDKRMDDKRKEHREKKFKETVEKYRAERPKIQQQFSDLKRKLSDVSANEWATLPEVGDSRNKKMRNPRTERFTPVPDSVIKSALLAGQTSTSVNPME-QFGGLNTPYPG-------------MATPSTTDLDLNKIGEARKSLVGVKLDQASDSVSGQTVVDPKGYLTDLQSLTPSSSGDIGDIKKARLLLKSVITTNQKHAPGWIAAARLEEVTGHIQKARNFIMKGTEACPKNEDVWLEAVRLQPKELSKGVVAQAIKQLSQSVRLWIKAADLEDERAAQKRVFRKALENIPNSVRLWKAAVELEDPEDARILLTRAVECCPQSVELWLALAHLETYENGRRVLNKARENIPTDRQIWITAAKLEEANGNTPLVDKIIERGVTSLSSNGVEINRELWIVDAEEADKAGATYTAQAIIRTVIGIGVEDEDRKHTWIEDAESCAVHSAYECARAIYAYALKTFPNKKSIWLRASYFEKNHGTRESLETLLQSAVKHCPKAEVLWLMGAKSKWMAGDISAARNILSLAFQANPNSEEIWLAAVKLESENNEDERARQLLTKARMSAPTARVFMKSVRLEWVLGNLRQAKEMLKEALRKYDSFPKLWMMKGQLHEEEKDLYEATQAYRNGTKKCPTSIHLWILLAKLEEKQGNLTKARSVMEQARHRNPQTDELWLHSIRIEVRAKQLEFAKSLLAKAMQVCPSSGILWAESIFMVSRPQRKTKSVDALKKCEHDPNVLLAVSKLFWSERKVTKAREWFQRTVKIDPDFGDAWAYFYKFELQHGTEANQKSVLEKCTKSEPHHGAEWQVISKSTKNWRLKTKDILHQVARSLKS 922
            KKK F+G  APLGYV GLGRGA+GFTTRSDIGPARD++D        P +  +  QM++   +  D+D+EDLN++NYDEF GY GSLFSSGPYEKDDEEAD +Y  +DKRMD++RKE RE++ KE +EKYR ERPKIQQQFSDLKRKL++V+  EW ++PEVGD+RNK+ RNPR E+ TPVPDS     L  G+  TSV+P + QFGGLNTPYPG             + TP T +LD+ KIG+AR +L+ ++L Q SDSVSGQTVVDPKGYLTDL S+ P+  GDI DIKKARLLLKSV  TN  H P WIA+ARLEEVTG +Q ARN IMKGTE CPK+EDVWLEA RLQP + +K VVAQA++ L QSVR++I+AA+LE +  A+KRV RKALE++PNSVRLWKAAVELE+PEDARI+L+RAVECCP SVELWLALA LETYEN R+VLNKARENIPTDR IWITAAKLEEANGNT +V+KII+R +TSL +NGVEINRE WI DAEE D+AG+  T QA++R VIGIG+E+EDRKHTW+EDA+SC  H+A ECARAIYAYAL+ FP+KKS+WLRA+YFEKNHGTRESLE LLQ AV HCPKAEVLWLMGAKSKW+AGD+ AAR+IL+LAFQANPNSEEIWLAAVKLESEN+E ERAR+LL KAR SAPTARVFMKSV+LEWV  N+R A+++ +EALR Y+ FPKLWMMKGQ+ E+++ + +A +AY  G KKCP S  LW+LL++LEEK G LT+AR+++E++R +NP+   LWL S+R+E RA     A +L+AKA+Q CP+SGILW+E+IF+ +RPQR+TKSVDALKKCEHDP+VLLAV+KLFWS+RK+TKAREWF RTVKID D GDAWA+FYKFELQHGTE  Q+ V ++C  +EP HG  W  +SK   NW+ K  DIL  VA  +K+
Sbjct:    4 KKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKK--NQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSKDIANWQKKIGDILRLVAGRIKN 939

The following BLAST results are available for this feature:

BLAST of TCONS_00004915-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004915-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRP6	0.000e+0	67.16	Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PR...	[more]

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TCONS_00004915-protein (polypeptide) - C. hemisphaerica