TCONS_00004917-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004917-protein
Unique NameTCONS_00004917-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004917-protein ID=TCONS_00004917-protein|Name=TCONS_00004917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MAFPPEMMHERVWFDRPSYDEAENHYQLFLTNNLSAQLAEKHFDKTDGGL
VEQVTKVASDAGCALISEIAKARDSIKQSLSGMASQVTHVVTAENDAHIT
ELTNENKELKGLVAKLVGQVAALELRVSKLEEGNTSSAAKKEEKAKDDDD
DFDLFGDDDDDEEEETEEEKRIKEERVKKYNDKKSKKPALIAKSSILLDI
KPWDDETDLKEMERLVKTIEMDGLVWGAAKLVPLAYGIKKLQILCVIEDD
KVSTDDLEDSITAFEDHVQSMDIAAFNKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002782XLOC_002782Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004917TCONS_00004917Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018940EF-1_beta_acid_region_euk
IPR014038EF1B_bsu/dsu_GNE
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR001326Transl_elong_EF1B_B/D_CS
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005853eukaryotic translation elongation factor 1 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
molecular_function GO:0003746 translation elongation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..183
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availableGENE3D1.20.5.320coord: 33..155
e-value: 4.0E-6
score: 26.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..171
IPR018940Elongation factor 1 beta central acidic region, eukaryoteSMARTSM01182EF-1_beta_acid_2coord: 154..184
e-value: 0.0094
score: 25.1
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainSMARTSM00888EF1_GNE_2coord: 193..279
e-value: 2.1E-42
score: 156.9
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainPFAMPF00736EF1_GNEcoord: 195..279
e-value: 3.4E-35
score: 120.0
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainCDDcd00292EF1Bcoord: 191..279
e-value: 8.48691E-40
score: 134.261
IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domainSUPERFAMILY54984eEF-1beta-likecoord: 191..279
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60coord: 187..279
e-value: 1.8E-41
score: 139.7
IPR001326Translation elongation factor EF1B, beta/delta chains, conserved sitePROSITEPS00825EF1BD_2coord: 268..279
IPR001326Translation elongation factor EF1B, beta/delta chains, conserved sitePROSITEPS00824EF1BD_1coord: 148..156

Blast
[Close]
BLAST of TCONS_00004917-protein vs. Swiss-Prot (Human)
Match: EF1D (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 209.149 bits (531), Expect = 1.020e-66
Identity = 124/297 (41.75%), Postives = 188/297 (63.30%), Query Frame = 0 
Query:    7 MMHERVWFDRPSYDEAENHYQLFLTNNLSAQLAEKHFDKTDGGLVEQVTKVASDAGCALISEIAKARDSIKQSLSGMASQVTHVVTAENDA----HITELTNENKELKGLVAKLVGQVAALELRVSKLEE---GNTSSAAKK---------EEKAKDD--------DDDFDLFGDDDDDEEEETEEEKRIKEERVKKYNDKKSKKPALIAKSSILLDIKPWDDETDLKEMERLVKTIEMDGLVWGAAKLVPLAYGIKKLQILCVIEDDKVSTDDLEDSITAFEDHVQSMDIAAFNKI 279
            + HE++WFD+  YD+AE  +                +++ +G +     +   +    ++ +IA+AR++I++SL+G +       T+ +       I  L  EN+ L+G+V +L   ++ LE R++ LE+   G+ ++A +          E  AK          DDD DLFG D+   EEE +E  +++EER+++Y +KK+KKPAL+AKSSILLD+KPWDDETD+ ++E  V++I++DGLVWGA+KLVP+ YGI+KLQI CV+EDDKV TD LE+ IT FE+HVQS+DIAAFNKI
Sbjct:    6 LAHEKIWFDKFKYDDAERRF----------------YEQMNGPVAGASRQ--ENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDN---EEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI 281
The following BLAST results are available for this feature:
BLAST of TCONS_00004917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1D1.020e-6641.75Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
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