TCONS_00004930-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004930-protein
Unique NameTCONS_00004930-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004930-protein ID=TCONS_00004930-protein|Name=TCONS_00004930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MAFSAARSHGNLVSILRSTVSNLCLLQKVEKTAIVCGCSYIQTRKFRPYS
VIPKKYLKRKNRDKKDRDDVYFLTDQVDPTYSVDDAVNMIKAYDLFGNEK
LDLLLNMNLGEGKNKVAVLKGLVHLPTPVTESQKVLVFAEGEDAVKAKRA
GATFVGGKELISKVEEGELEFDHCISTLDFLPNIKHLPKILRNKMPNTRR
GTATNDIEEALKIFSHGETYMADNTGKMRQTIALSNFSKEEIEGNLKEIM
KAVDSHKKAASLTTEKFYKHVSLALPAGPKIDLKISEVTPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002790XLOC_002790Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004930TCONS_00004930Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028364Ribosomal_L1/biogenesis
IPR002143Ribosomal_L1
IPR016095Ribosomal_L1_3-a/b-sand
IPR023674Ribosomal_L1-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 239..259
NoneNo IPR availableGENE3D3.30.190.20coord: 205..287
e-value: 9.3E-7
score: 28.5
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 99..273
e-value: 2.1E-20
score: 73.2
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 83..260
e-value: 4.77054E-26
score: 101.492
IPR002143Ribosomal protein L1PIRSFPIRSF002155RPL1p_RPL1a_RPL10e_RPL1ocoord: 31..92
e-value: 280.0
score: -1.5
coord: 74..286
e-value: 5.6E-26
score: 89.2
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 129..204
e-value: 4.2E-22
score: 77.8
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 77..283

Blast
[Close]
BLAST of TCONS_00004930-protein vs. Swiss-Prot (Human)
Match: RM01 (39S ribosomal protein L1, mitochondrial OS=Homo sapiens GN=MRPL1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.649e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = 0 
Query:   68 DDVYFLTDQVDPTYSVDDAVNMIKAYDL--FGNEK----LDLLLNMNLGEGKNKVAVLKGLVHLPTP-VTESQKVLVFAEGEDAVK-AKRAGATFVGGKELISKVEEGELEFDHCISTLDFLPNIKHLPKILRNKMPNTRRGTATNDIEEALKIFSHGETYMADNTGK--MRQTIALSNFSKEEIEGNLKEIMKAVDSHK 257
            DDVY         Y V+ AV+++K + +  F + K    LDL L+M LG+ KN V     ++ LP P  +E  KV VF E    VK A+  GA F GG  LI K+ + E+  D  ++  + +P +  L K L  K P   R +   DI + L++F +G     D   +  ++  IA  + S ++I  NL+ ++  V  H+
Sbjct:   84 DDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPKQSVYLDLTLDMALGKKKN-VEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHR 282
The following BLAST results are available for this feature:
BLAST of TCONS_00004930-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM015.649e-2032.0039S ribosomal protein L1, mitochondrial OS=Homo sa... [more]
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