TCONS_00004950-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004950-protein
Unique NameTCONS_00004950-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004950-protein ID=TCONS_00004950-protein|Name=TCONS_00004950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
EIYDLIATGKSISGTPYDSIEGAPYQKCFSVCHYSSKCFSFEVWQSTIFT
GCRFYQQIYSTLLPLLDNPGVRYYSIALPKDCAEWYKLGERTSGVYEVNL
LGKFRKKVRCNMVLDGGGWMIFQRRFDGSVDFFNEERAAYREGFGDVENE
FWLGNKWLNLLTTSEKYDYLVWAKSYDGVEAMKKMLRVRVEDESQGYMIT
FEEELTEFSPNYPYGMGSMHGSKFSTAQVENDIHPTMNCAQSFGPWWHKG
CHAVAMNGKYSTNAAVVSFANGIMWGGWKTLDVSLKNSTLMIRPRSFNP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002798XLOC_002798Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004950TCONS_00004950Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSMARTSM00186FBG_2coord: 77..295
e-value: 2.5E-39
score: 146.7
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPFAMPF00147Fibrinogen_Ccoord: 79..295
e-value: 2.8E-44
score: 151.5
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPROSITEPS51406FIBRINOGEN_C_2coord: 73..296
score: 33.913
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSUPERFAMILY56496Fibrinogen C-terminal domain-likecoord: 73..297
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 69..224
e-value: 3.8E-37
score: 127.6
IPR014715Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2GENE3D4.10.530.10coord: 225..286
e-value: 1.1E-15
score: 56.9

Blast
[Close]
BLAST of TCONS_00004950-protein vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.034e-33
Identity = 81/220 (36.82%), Postives = 119/220 (54.09%), Query Frame = 0 
Query:   79 PKDCAEWYKLGERTSGVYEVNLLGKFRKKVR--CNMVLDGGGWMIFQRRFDGSVDFFNEERAAYREGFGDVENEFWLGNKWLNLLTTSEKYDYLVWAKSYDGVEAM-KKMLRVRVEDESQGYMITFEEELTEFSPNYPYGMGSMHGSKFSTAQVENDIHPTMNCAQSF-GPWWHKGCHAVAMNGKYSTNAAVVSFANGIMWGGWKTLDVSLKNSTLMIRP 294
            P+DCA+    G+  SGVY + L G+  +K++  C+M  DGGGW++FQRR +G  DFF  + A YR GFG+VE+EFWLG   ++ +T+  +Y+  V  +  DG EA      R  VED    Y +     +  ++      +    G  FST   +ND+  T NCA S+ G WW+K CH   +NGKY  +      + GI W  WK  + S+    + +RP
Sbjct: 1135 PQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFF-RKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMR--DGQEAAFASYDRFSVEDSRNLYKL----RIGSYNGTAGDSLSYHQGRPFSTEDRDNDVAVT-NCAMSYKGAWWYKNCHRTNLNGKYGES----RHSQGINWYHWKGHEFSIPFVEMKMRP 1342
The following BLAST results are available for this feature:
BLAST of TCONS_00004950-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR2.034e-3336.82Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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