TCONS_00005098-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005098-protein
Unique NameTCONS_00005098-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005098-protein ID=TCONS_00005098-protein|Name=TCONS_00005098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MGKKKTVASDENIALDVEKQEEFNKNLEELNDEEIDYGTIYVGHLPRGFY
EDEMKAYFSQFGTVSKVRLARSKKTGGYKGYGYVQFTNSDVAKIAADAMN
NYLMFDRLLKCQYVAEEDLHPAIWKGYNKKFVWADRTKKHKKLYNRTRTE
DQLKKTADKLIKKDNTRRKKLLELGINYEFGGYEGAMKKKKVAKTPKTKT
AKSKISKKTPKKELSEAAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002894XLOC_002894Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005098TCONS_00005098Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 13..33
NoneNo IPR availableGENE3D3.30.70.330coord: 3..122
e-value: 4.8E-22
score: 77.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..219
NoneNo IPR availableCDDcd12307RRM_NIFK_likecoord: 39..112
e-value: 1.37379E-40
score: 134.239
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 39..112
e-value: 7.9E-20
score: 81.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..109
e-value: 3.6E-15
score: 55.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 38..116
score: 16.278
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 31..120

Blast
[Close]
BLAST of TCONS_00005098-protein vs. Swiss-Prot (Human)
Match: MK67I (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=NIFK PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.698e-34
Identity = 76/208 (36.54%), Postives = 122/208 (58.65%), Query Frame = 0 
Query:   13 IALDVEKQEEFNKNLEELN--------DEEIDYGTIYVGHLPRGFYEDEMKAYFSQFGTVSKVRLARSKKTGGYKGYGYVQFTNSDVAKIAADAMNNYLMFDRLLKCQYVAEEDLHPAIWKGYNKKFVWADRTKKHKKLYNRTRTEDQLKKTADKLIKKDNTRRKKLLELGINYEFGGYEGAMKKKKVAKTPKTKTAKSKISKKTPKK 212
            ++L+ ++  EF K + ++          E++  G +YV HLP    E ++ +YFSQFGTV++ RL+RSK+TG  KGY +V+F + DVAKI A+ MNNYL  +RLL+C ++  E +H  ++K +N  F     +    K YNR RT  Q  +  ++  KK+   RKKL + GI+Y+F       K + ++KT +  + K ++ +K  KK
Sbjct:   12 LSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQP--SYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSL-ILQKTESISKTNRQTSTKGQVLRKKKKK 216
The following BLAST results are available for this feature:
BLAST of TCONS_00005098-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MK67I1.698e-3436.54MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
back to top