TCONS_00005100-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005100-protein
Unique NameTCONS_00005100-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005100-protein ID=TCONS_00005100-protein|Name=TCONS_00005100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MSENIHLDTIIVSKNEAPVIKEKTPYLISADFEEKPEINYNTAKKWVYFL
LERPNTRFAVIYHFTSLMLIVGSLVVSVLSTIEEMEDKMISVMFYYELFL
LIWFFGEFGLRLWSCSYISRYQGTRGHLRFLFSIYMLIDIFVILSTITTF
VMQINGSYFAILRVTRFMQVFRILRIDRQRGDFRTMGNVVKEHSKELITV
YFVGFVIMFSATYIVYLVEKHTEPLEKTAADVPDPTPTSSSNETLSEVTI
NNMANGLYWAVITVTSVGYGDISPITWAGKVFTAVFALIGCAFFSLPAGI
LGSGFALQVAKQKKEKRYVKVRSPAAYLIQTAWRNYALRKGHNDSEGTWK
YLLPMLKDDYETPKEQTLEQMMKSEIAKGNYDMGTMFPPVFSSDGIRSRN
GDFIRKTESPRMDKYFVPMLNNNNHNPLEEGIKRLGKIIGRGTDTSAMSQ
SNIISRDAILIPKSRQSKYQRTESKTSSNHHPHGKNNGASHHNNEMADVK
IHQQIRERYKIALRFIMKLRYLTAIKIFKSVRHPFVNMQDIMEKNAVSHV
EMLSHIKNMSDSFDVLHDELLELRYSLMEMRDGDGLSSPRQKTIQSPFHY
NQPSFRRSMKRSHSFTAGTDLAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002896XLOC_002896Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005100TCONS_00005100Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003937K_chnl_volt-dep_KCNQ
IPR005821Ion_trans_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 53..81
score: 23.28
coord: 279..305
score: 28.83
coord: 95..118
score: 28.31
coord: 250..272
score: 41.01
IPR003937Potassium channel, voltage dependent, KCNQPRINTSPR01459KCNQCHANNELcoord: 103..122
score: 35.32
coord: 123..142
score: 43.06
coord: 183..202
score: 43.55
NoneNo IPR availableGENE3D1.20.120.350coord: 59..195
e-value: 2.2E-18
score: 65.8
NoneNo IPR availableGENE3D1.20.5.110coord: 271..307
e-value: 2.0E-11
score: 42.9
NoneNo IPR availableGENE3D1.10.287.70coord: 196..269
e-value: 6.6E-11
score: 41.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 464..494
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 604..623
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 55..306
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 62..308
e-value: 7.6E-22
score: 77.6

Blast
[Close]
BLAST of TCONS_00005100-protein vs. Swiss-Prot (Human)
Match: KCNQ2 (Potassium voltage-gated channel subfamily KQT member 2 OS=Homo sapiens GN=KCNQ2 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.756e-77
Identity = 175/602 (29.07%), Postives = 293/602 (48.67%), Query Frame = 0 
Query:    9 TIIVSKNEAPVIKE--KTPYLISADFEEKPEIN--YNTAKKWVYFLLERPNTRFAVIYHFTSLMLIVGSLVVSVLSTIEEMEDKMISVMFYYELFLLIWFFGEFGLRLWSCSYISRYQGTRGHLRFLFSIYMLIDIFVILSTITTFVMQINGSYFAI--LRVTRFMQVFRILRIDRQRGDFRTMGNVVKEHSKELITVYFVGFVIMFSATYIVYLVEKHTEPLEKTAADVPDPTPTSSSNETLSEVTINNMANGLYWAVITVTSVGYGDISPITWAGKVFTAVFALIGCAFFSLPAGILGSGFALQVAKQKKEKRYVKVRSPAAYLIQTAWRNYALRKGHNDSEGTWKYLLPMLKDDYETPKEQTLEQMMKSEIAKGNYDMGTMFPPVFSSDGIR---SRNGDFIRKTESPRMDKYFVPMLNNNNHNPLEEGIKRLGKIIGRGTDTSAMSQSNIISRDAILIPKSRQSKYQRTESKTSSNHH---------PHGKNNG--------------ASHHNNEMADVK--------------IHQQIRERYKIALRFIMKLRYLTAIKIFKSVRHPFVNMQDIMEKNAVSHVEMLSHIKNMSDSFD 564
             ++++ +EAP        P    A   + P+ N  Y   + ++Y +LERP   +A IYH    +L+   LV+SV STI+E E      ++  E+  ++ F  E+ +R+W+     RY+G RG L+F    + +IDI V++++I        G+ FA   LR  RF+Q+ R++R+DR+ G ++ +G+VV  HSKEL+T +++GF+ +  A+++VYL EK                     N+       +  A+ L+W +IT+T++GYGD  P TW G++  A F LIG +FF+LPAGILGSGFAL+V +Q ++K + K R+PAA LIQ+AWR YA      D   TW+Y             E+T+   M S   +  Y    + PP+   + +R   S++G   RK   P       P   +    PL       G   GR +   ++ +  + S    +  K + S   +T  ++ S            P   + G              AS  N+E A +               + + +    K+++R +  +R+L + + FK    P+ ++ D++E+ +  H++MLS IK++    D
Sbjct:   39 ALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRG-WAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK-------------------GENDHF-----DTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYY------------ERTVTVPMYSSQTQ-TYGASRLIPPLNQLELLRNLKSKSGLAFRKDPPPEPS----PSKGSPCRGPL------CGCCPGRSSQKVSL-KDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGDRSRARQAFRIKGAASRQNSEEASLPGEDIVDDKSCPCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPY-DVMDVIEQYSAGHLDMLSRIKSLQSRVD 590
The following BLAST results are available for this feature:
BLAST of TCONS_00005100-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNQ21.756e-7729.07Potassium voltage-gated channel subfamily KQT memb... [more]
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