TCONS_00005107-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005107-protein
Unique NameTCONS_00005107-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005107-protein ID=TCONS_00005107-protein|Name=TCONS_00005107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
KQQRMDTKERIRFNVSGQTYETYVSTIQRFPKTLLGSATSRNKYYCHKLN
QYFFNRNHHAFEAILFFYQSNGTLSRPQNVSVDCFEKECEFFCLPEVAMA
TMRTNEGRELVHSLRNISFTTKYDNSTRRLRIWNIFENPYSSCLAMKMTI
FQIAAITVSIVINCVETIPGIAGTETNKIDKNPWLMMEIILSGWFLLEFT
LRAFCTPNWRRFLFTSLNWIDLFGIPPYLYINHQTDNKYLEILQFFRFFR
ALRIFRLVKCSRRLKAVMIIFQDSLKDLQLFFVCLFIIVVFGASVLYFLE
KDAPDTHFISVPDSMWWGVQTFLTLGYGDISPTTPLGKMFSSLFMVFGVT
TMSLPVLSLIMKFSAYSKVM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002903XLOC_002903Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005107TCONS_00005107Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 139..167
score: 35.9
coord: 248..274
score: 29.17
coord: 186..209
score: 30.2
coord: 308..330
score: 52.17
coord: 212..232
score: 34.07
coord: 337..363
score: 34.4
coord: 51..70
score: 46.86
coord: 277..300
score: 31.1
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 9..109
e-value: 4.0E-5
score: 33.0
NoneNo IPR availableGENE3D1.20.5.110coord: 329..364
e-value: 1.7E-8
score: 33.4
NoneNo IPR availableGENE3D1.10.287.70coord: 277..327
e-value: 1.2E-12
score: 47.3
NoneNo IPR availableGENE3D3.30.710.10coord: 1..118
e-value: 4.7E-20
score: 71.1
NoneNo IPR availableGENE3D1.20.120.350coord: 145..276
e-value: 1.2E-20
score: 73.1
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 145..363
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 150..364
e-value: 1.9E-27
score: 96.0
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 11..100
e-value: 7.9E-21
score: 74.1
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 9..103

Blast
[Close]
BLAST of TCONS_00005107-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.244e-69
Identity = 135/385 (35.06%), Postives = 207/385 (53.77%), Query Frame = 0 
Query:    9 ERIRFNVSGQTYETYVSTIQRFPKTLLGSATSRNKYYCHKLNQYFFNRNHHAFEAILFFYQSNGTLSRPQNVSVDCFEKECEFFCLPEVAMATMRTNEG--RELVHSLRNISFTTKYDNSTRRLRIWNIFENPYSSCLAMKMTIFQIAAITVSIVINCVETIPGIAGTE-----TNKIDK-----------NPWLMMEIILSGWFLLEFTLRAFCTPNWRRFLFTSLNWIDLFGIPPYLY-----INHQTDNKYLE---ILQFFRFFRALRIFRLVKCSRRLKAVMIIFQD---SLKDLQLFFVCLFIIVVFGASVLYFLEKDAPDTHFISVPDSMWWGVQTFLTLGYGDISPTTPLGKMFSSLFMVFGVTTMSLPVLSLIMKFS 364
            ER+  N+SG  +ET + T+ +FP TLLG+   R +Y+    N+YFF+RN  +F+AIL++YQS G L RP NV +D F +E +F+ L E AM   R +EG  +E    L    +         + ++W +FE P SS  A  + I  +  I +SIVI C+ET+P +   +      ++ID            +P+ ++E +   WF  E  +R F  P+   F    +N+ID+  I PY       I  Q  N+  E    L   R  R +R+FR+ K SR  K + I+ Q    S+++L L    LFI V+  +S +YF E +  ++HF S+PD+ WW V +  T+GYGD+ P T  GK+  SL  + GV T++LPV  ++  F+
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEY---------QRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 412
The following BLAST results are available for this feature:
BLAST of TCONS_00005107-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.244e-6935.06Potassium voltage-gated channel subfamily A member... [more]
back to top