TCONS_00005414-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005414-protein
Unique NameTCONS_00005414-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005414-protein ID=TCONS_00005414-protein|Name=TCONS_00005414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp
MAPEIHNMQVELGSAEIYFAKKLANNDKKIRDRTLKKLKSWLKSKGTSEE
GIDENELLKLWKGLFYCMWFSDKPLVQEELADNLAEIINLFSPSSNGILF
GKTFLKTMGREWFGIDRLRLDKFYMLIKKSIKSLLLYISNQQWNTEFLET
ASSFLIEILLDSQYPDGLKLYFSENILSILKDVCSNSENVITPTGFSMTL
KPFFTLYGHSTKASILRNLKQEVMDPLMTAKFTDSQEKPIKIPYTELADD
LCKLGAEKDILTPNRKQLFQYTDIYRELAKEQDEESKKKKKTKRKKKTVE
KSDDSENIVKKKKAKIEESNCEETLTEVETQSSGIESEVGTADETTVKTI
DKKVKKKKTKKVKSTSASIAEEEEGQTNIEEVTAAISEPSNATVDSDAPK
SVTKKRKTKKSKVVVSEEPVEVTSSDVTTTTQDQTTAVPEDVDMKGADVS
QAQMAPSTKKSNKKKKVKSKPVEKNNVVEPLVVEVNGESLHEEVSEEIDD
VKKTLDFTSIAMASEDADLATDNDKKTKKKKKRASMPGKEITKTPEENST
TDGAEKKKVKKVRKSLPAKLQSDTDNEKTSLEESKTVQLKEEQPTLNLIS
ETGKGTAQKKKKKNKGLSVEDAPKPFVEFLPADTPKAFARKPKIVKSEPR
IMAKESKVKKTIKTPKTEIKRKSIIIDLSKNKSIGCKELKFSPLPAFDPN
LKPSKGLLKIRSRAKSSTVDFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003086XLOC_003086Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005414TCONS_00005414Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010301Nop52
Vocabulary: Cellular Component
TermDefinition
GO:0030688preribosome, small subunit precursor
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0030688 preribosome, small subunit precursor
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 311..331
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 512..618
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..478
IPR010301Nucleolar, Nop52PFAMPF05997Nop52coord: 19..224
e-value: 1.1E-56
score: 192.0

Blast
[Close]
BLAST of TCONS_00005414-protein vs. Swiss-Prot (Human)
Match: RRP1B (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.288e-39
Identity = 75/179 (41.90%), Postives = 115/179 (64.25%), Query Frame = 0 
Query:    8 MQVELGSAEIYFAKKLANNDKKIRDRTLKKLKSWLKSKGTSE-EGIDENELLKLWKGLFYCMWFSDKPLVQEELADNLAEIINLFSPSSNGILFGKTFLKTMGREWFGIDRLRLDKFYMLIKKSIKSLLLYISNQQWNTEFLETASSFLIEILL--DSQYPDGLKLYFSENILSILKDV 183
            M   +  AEI FA++LA+++K IRDR +KKL+ ++  K   E  G  + ELLK+WKGLFYCMW  D+PL+QEELA+ +A++++  + S+   LF +TF +TM REW GIDRLRLDK+YMLI+  ++     +    W    ++     L++ +L  +SQ P+G++ +F +  L  L  V
Sbjct:    1 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV 179
The following BLAST results are available for this feature:
BLAST of TCONS_00005414-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP1B2.288e-3941.90Ribosomal RNA processing protein 1 homolog B OS=Ho... [more]
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