TCONS_00005422-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005422-protein
Unique NameTCONS_00005422-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005422-protein ID=TCONS_00005422-protein|Name=TCONS_00005422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MSTGAEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF
LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNS
FQQTNKWIEDVKAERGNDVIIMLVGNKTDLAEKRQVATESGEAKAKELGV
MFIETSAKAGHNVKQLFRRVASALPGMDSAPEQNKDLIDVKLEDTPQDAP
QEGGGCSC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003089XLOC_003089Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005422TCONS_00005422Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 14..35
score: 42.78
coord: 55..77
score: 48.05
coord: 152..174
score: 38.51
coord: 117..130
score: 52.54
coord: 37..53
score: 33.88
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 11..177
e-value: 2.7E-34
score: 129.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..177
e-value: 2.1E-85
score: 299.7
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 19..203
e-value: 1.2E-5
score: 30.6
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 16..176
e-value: 6.4E-13
score: 45.5
NoneNo IPR availableGENE3D3.40.50.300coord: 78..174
e-value: 5.8E-37
score: 125.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 12..77
e-value: 7.5E-28
score: 95.9
NoneNo IPR availablePROSITEPS51419RABcoord: 9..208
score: 32.063
NoneNo IPR availableCDDcd01861Rab6coord: 14..174
e-value: 3.74083E-117
score: 332.279
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..173
e-value: 3.0E-59
score: 199.1
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..169
e-value: 8.9E-29
score: 98.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..177

Blast
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BLAST of TCONS_00005422-protein vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 362.844 bits (930), Expect = 1.478e-129
Identity = 175/209 (83.73%), Postives = 192/209 (91.87%), Query Frame = 0 
Query:    1 MSTGAEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFQQTNKWIEDVKAERGNDVIIMLVGNKTDLAEKRQVATESGEAKAKELGVMFIETSAKAGHNVKQLFRRVASALPGMDSAPEQNK-DLIDVKLEDTPQDAPQEGGGCSC 208
            MSTG +FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSFQQT KWI+DV+ ERG+DVIIMLVGNKTDLA+KRQV+ E GE KAKEL VMFIETSAKAG+NVKQLFRRVA+ALPGM+S  ++++ D+ID+KLE  PQ+ P   GGCSC
Sbjct:    1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLE-KPQEQPVSEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00005422-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A1.478e-12983.73Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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