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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00005430-protein ID=TCONS_00005430-protein|Name=TCONS_00005430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp
MFSRIFDGRQRQSENRPLTNPSPPNSNTAEYQNPVYDDGASLPKEGDTHS
LMGVQSIKTDSDHHPPEVELDNEDGDLFDIKAFEEMEHVLNKIDETKKSK
DLKIEELDRNKKGNNSASKWRFGPAPIEDGVSEGDVMKIGSLEGTFNHKE
NKVFSELKIMMKNQPMHEVNNEEATSALLNYFAELGVSDEAVQVDYTFIE
QLLISADINLHDKYGQSLMHEVAREWSLDFAEYLKLRGAELDHADNYGRT
PLFVAVASNHVEMARWLLDNKANISQKTKANESQTLIHYAAKYNAIDCFD
LLLEYGADPNEEDGNGQTPIFLAALYGRNPIAQHMLRIGISTFSVNVSGV
LCIELIVQNLPTETAWQALEQYYETDNLNRREVYNMVGFSRSCMAKVGGA
AKKYSPPNLLEILVDQQDFVLVTNPVVNQMIKLKGRVFATKYLRLNVFLY
LLFTLLWTASISIRETNQFGWTYKVSMIVVLTIFGELISFHFMWKVYREY
KSLLKANDHEKERLRNDVREREKHVHPRWEVEANLLNKEKDTIERRSTNY
WSNGWNIIEVTCLVLSVVQFLIVMLWIGRPSTRYIHSIKIYYSAAFLVVV
WIRLNNCFHYSQTVGAFVAMLGECVVAVARFGFLFLEFFIPFTCAFWVLF
GGNRKVLDGNDDASGEYVAFENLVYQMYLLTIVGDYDYGDLKIINENFAQ
IFVGLYFVLVSVITLNLFIALMSEAIARINEKASAQAYLKEAEEITLIEK
YFPVYRDEFENFLKEKANPWIVNGISASGDDSEGHDRKLVLVAKQISKSM
QDSVKELRETKKSLDALAEKIEQLDSRHPREKRLETIQAINKISNFYNKA
FNKVQRKTFYKVTDFIEDAITSRQYQS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 800..827 |
| None | No IPR available | COILS | Coil | Coil | coord: 90..110 |
| None | No IPR available | COILS | Coil | Coil | coord: 497..517 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 444..731
e-value: 6.0E-9
score: 35.1 |
| None | No IPR available | PFAM | PF13857 | Ank_5 | coord: 281..320
e-value: 1.9E-7
score: 31.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..48 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 209..336
e-value: 7.07181E-31
score: 117.87 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 315..347
e-value: 1.2
score: 18.2
coord: 214..243
e-value: 1200.0
score: 4.4
coord: 247..276
e-value: 1.1E-5
score: 34.9
coord: 282..311
e-value: 2.8E-4
score: 30.2 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 282..314
score: 11.22 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 247..279
score: 11.247 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 191..277
e-value: 6.2E-10
score: 39.4 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 81..381
e-value: 4.3E-39
score: 133.7 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 205..347
score: 34.774 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 191..359 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 547..733
e-value: 4.2E-14
score: 52.3 |
Blast
The following BLAST results are available for this feature:
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