TCONS_00005434-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005434-protein
Unique NameTCONS_00005434-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005434-protein ID=TCONS_00005434-protein|Name=TCONS_00005434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
MSSQKKTSGGSSKMRIRAFPMCMDEKYTAEIWTLLKNAIQEIQRKNNSGL
SFEELYRNAYTMVLHKNGELLYSGVQDVVTKHLVSKVREDILSNINNNFL
ESLNTSWDDHQIAMVMIRDILMYMDRAYVDQNKKMPVYELGLQLFRDHVV
RHNVIQECLRETLLTMIDKERRGEIVDRGFIKNVCQMLILLGTSVYQDDF
ERHFLKVSAEFYKLESEKFLAENSASVYIWKVEARITEERERARHCLDSS
SEPHIVQVVEEELIAKHMKTIVEMENSGVVHMLKNSKYEDLGCMYRLFKR
VKDGLRSMCDAMSKYLREQGRAIVSEEEESEGKNAVVFIQKLLELKERFD
LFMEKSFNQDIIFKQTISGDFEHFLNLNTKSPEYLSLFIDEKLKKGSKGL
SEQEIEVVLDKTMVLFRYLQEKDVFERYYKQHLAKRLLLNKSVSDDAEKN
MISKLKTECGCQFTLKLEGMFKDMSLSNTMNEDFKSHVTDSATMLCGVDL
TVRVLTTGYWPTQTATGNCNIPLAPRQAFESFKKFYLRCHTGRQLTIQPQ
MGAADLNAVFFIKKDSKVTPKKHIISVSTYQMCILMLFNKKEKVTYEDFI
HETEIPEKDLLRALQSLAMGKVGQRILTKEPKTKEIEPAHTFSINDQFTS
KLFRVKIQTVSSKGETEPERKETRQKVDEDRKHEIEAAVVRIMKARKKLN
HNVLVTEVIEQLKSRFTPSPVVIKKRIESLIEREYLARSSEDRKVYTYLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003096XLOC_003096Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005434TCONS_00005434Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019559Cullin_neddylation_domain
IPR016158Cullin_homology
IPR011991WHTH_DNA-bd_dom
IPR001373Cullin_N
IPR016157Cullin_CS
IPR016159Cullin_repeat-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0031625ubiquitin protein ligase binding
Vocabulary: Cellular Component
TermDefinition
GO:0031461cullin-RING ubiquitin ligase complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
molecular_function GO:0031625 ubiquitin protein ligase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019559Cullin protein, neddylation domainSMARTSM00884Cullin_Nedd8_2coord: 677..744
e-value: 8.5E-38
score: 141.6
IPR019559Cullin protein, neddylation domainPFAMPF10557Cullin_Nedd8coord: 680..742
e-value: 1.4E-28
score: 98.6
IPR016158Cullin homologySMARTSM00182cul_2coord: 410..560
e-value: 9.3E-77
score: 271.0
IPR016158Cullin homologyPROSITEPS50069CULLIN_2coord: 380..618
score: 55.655
IPR016158Cullin homologySUPERFAMILY75632Cullin homology domaincoord: 374..658
NoneNo IPR availableGENE3D1.20.1310.10coord: 149..269
e-value: 2.6E-36
score: 123.7
NoneNo IPR availableGENE3D1.20.1310.10coord: 272..382
e-value: 5.8E-34
score: 115.9
NoneNo IPR availableGENE3D4.10.1030.10coord: 496..568
e-value: 2.8E-12
score: 45.5
NoneNo IPR availableGENE3D1.20.1310.10coord: 383..494
e-value: 8.0E-42
score: 141.5
NoneNo IPR availableGENE3D1.20.1310.10coord: 16..148
e-value: 4.2E-46
score: 155.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 660..680
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 647..750
e-value: 2.6E-42
score: 142.8
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 578..646
e-value: 8.1E-23
score: 79.8
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 663..750
IPR001373Cullin, N-terminalPFAMPF00888Cullincoord: 32..648
e-value: 3.1E-215
score: 716.4
IPR016157Cullin, conserved sitePROSITEPS01256CULLIN_1coord: 723..750
IPR016159Cullin repeat-like-containing domainSUPERFAMILY74788Cullin repeat-likecoord: 25..378

Blast
[Close]
BLAST of TCONS_00005434-protein vs. Swiss-Prot (Human)
Match: CUL3 (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 1108.21 bits (2865), Expect = 0.000e+0
Identity = 537/770 (69.74%), Postives = 647/770 (84.03%), Query Frame = 0 
Query:    1 MSSQKKTSGG--SSKMRIRAFPMCMDEKYTAEIWTLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKNGELLYSGVQDVVTKHLVSKVREDILSNINNNFLESLNTSWDDHQIAMVMIRDILMYMDRAYVDQNKKMPVYELGLQLFRDHVVRHNVIQECLRETLLTMIDKERRGEIVDRGFIKNVCQMLILLGT---SVYQDDFERHFLKVSAEFYKLESEKFLAENSASVYIWKVEARITEERERARHCLDSSSEPHIVQVVEEELIAKHMKTIVEMENSGVVHMLKNSKYEDLGCMYRLFKRVKDGLRSMCDAMSKYLREQGRAIVSEEEESEGKNAVVFIQKLLELKERFDLFMEKSFNQDIIFKQTISGDFEHFLNLNTKSPEYLSLFIDEKLKKGSKGLSEQEIEVVLDKTMVLFRYLQEKDVFERYYKQHLAKRLLLNKSVSDDAEKNMISKLKTECGCQFTLKLEGMFKDMSLSNTMNEDFKSHVTDSATMLCGVDLTVRVLTTGYWPTQTATGNCNIPLAPRQAFESFKKFYLRCHTGRQLTIQPQMGAADLNAVFF--IKKD---------SKVT---PKKHIISVSTYQMCILMLFNKKEKVTYEDFIHETEIPEKDLLRALQSLAMGKVGQRILTKEPKTKEIEPAHTFSINDQFTSKLFRVKIQTVSSK-GETEPERKETRQKVDEDRKHEIEAAVVRIMKARKKLNHNVLVTEVIEQLKSRFTPSPVVIKKRIESLIEREYLARSSEDRKVYTYLA 750
            MS+  K +G    +KMRIRAFPM MDEKY   IW LLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHK+GE LY+G+++VVT+HL++KVRED+L+++NNNFL++LN +W+DHQ AMVMIRDILMYMDR YV QN    VY LGL +FRD VVR+  I++ LR+TLL MI +ER+GE+VDRG I+N CQML++LG    SVY++DFE  FL++SAEF+++ES+KFLAENSASVYI KVEARI EE ER  HCLD S+E  IV+VVE ELI+KHMKTIVEMENSG+VHMLKN K EDLGCMY+LF RV +GL++MC+ MS YLREQG+A+VSEE   EGKN V +IQ LL+LK RFD F+ +SFN D +FKQTI+GDFE+FLNLN++SPEYLSLFID+KLKKG KGL+EQE+E +LDK MVLFR++QEKDVFERYYKQHLA+RLL NKSVSDD+EKNMISKLKTECGCQFT KLEGMF+DMS+SNT  ++F+ H+  +   L GVDLTVRVLTTGYWPTQ+AT  CNIP APR AFE F++FYL  H+GRQLT+Q  MG+ADLNA F+  +KK+         ++VT    +KHI+ VST+QM ILMLFN +EK T+E+   ET+IPE++L+RALQSLA GK  QR+LTKEPK+KEIE  H F++NDQFTSKL RVKIQTV++K GE++PERKETRQKVD+DRKHEIEAA+VRIMK+RKK+ HNVLV EV +QLK+RF PSPVVIKKRIE LIEREYLAR+ EDRKVYTY+A
Sbjct:    1 MSNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEE--GEGKNPVDYIQGLLDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNSRSPEYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
The following BLAST results are available for this feature:
BLAST of TCONS_00005434-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CUL30.000e+069.74Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
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