TCONS_00005479-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005479-protein
Unique NameTCONS_00005479-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005479-protein ID=TCONS_00005479-protein|Name=TCONS_00005479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MVLLAAAVCSKNGKALVSRQFVEMSRSRIEGILSAFPKLMNTGKQHTFVE
TESVRYVYQPLDKLFMLLITTKASNILEDLETLRLFSRVVPEYCKVLDDN
EILENSFPLIFAFDEIVALGYRENVNLANIRTFIEMDSHEERVINAVRKT
QELEAKEQMKRKAKELQAQRIAAGKGRSLLGGFGGNQSGSSTGGYPTRQD
NTPSVGDVATPVETPATKSYPSRPAGKGKAMKLGGKSKDIDSFVDKLREE
GTVVSASMKQTAKTAPTPSVPMSSIHIKIEEKVMLTAGRHGGLQNMEVRG
IVLLRITDPNMSKITIPYTNNDSKGFQMQTHPNVDKKQFNSNSVIGLKSG
GKGFPVNNEIGVVKWRLQTKDEDMIPLTINCWPNENGDDCEVTIEYELQA
KDLELNDVVIYIPVPSGVGAPTIGEMDGDYHFDARKSVLEWKMPVIDSSN
PSGSMEFTISGVPDDFFPVNVSFYSTKTICDFDINDVQQAETKSPAKFSQ
ERALIVEKYEVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003110XLOC_003110Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005479TCONS_00005479Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028565MHD
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 136..169
NoneNo IPR availableGENE3D2.60.40.1170coord: 375..478
e-value: 3.4E-10
score: 39.6
NoneNo IPR availableGENE3D3.30.450.60coord: 2..141
e-value: 2.5E-24
score: 85.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..234
NoneNo IPR availableCDDcd09254AP_delta-COPI_MHDcoord: 273..509
e-value: 1.1415E-113
score: 337.664
IPR028565Mu homology domainPFAMPF00928Adap_comp_subcoord: 273..495
e-value: 1.8E-30
score: 106.1
IPR028565Mu homology domainPROSITEPS51072MHDcoord: 272..512
score: 30.577
IPR028565Mu homology domainSUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 271..494
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 8..130
e-value: 6.5E-5
score: 22.8
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 6..141

Blast
[Close]
BLAST of TCONS_00005479-protein vs. Swiss-Prot (Human)
Match: COPD (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 317/516 (61.43%), Postives = 400/516 (77.52%), Query Frame = 0 
Query:    1 MVLLAAAVCSKNGKALVSRQFVEMSRSRIEGILSAFPKLMNTGKQHTFVETESVRYVYQPLDKLFMLLITTKASNILEDLETLRLFSRVVPEYCKVLDDNEILENSFPLIFAFDEIVALGYRENVNLANIRTFIEMDSHEERVINAVRKTQELEAKEQMKRKAKELQAQRIAAGKGRSLLGGFGGNQSGSSTGGYPTRQDNTPSVGDVATPVETPATKSYPSRPAGKGKAMKLGGKSKDIDSFVDKLREEG-TVVSASM-KQTAKTAP--TPSVPMSSIHIKIEEKVMLTAGRHGGLQNMEVRGIVLLRITDPNMSKITIPYTNNDSKGFQMQTHPNVDKKQFNSNSVIGLKSGGKGFPVNNEIGVVKWRLQTKDEDMIPLTINCWPNENGDDCEVTIEYELQAKDLELNDVVIYIPVPSGVGAPTIGEMDGDYHFDARKSVLEWKMPVIDSSNPSGSMEFTISGVPDDFFPVNVSFYSTKTICDFDINDVQQAETKSPAKFSQERALIVEKYEVV 512
            MVLLAAAVC+K GKA+VSRQFVEM+R+RIEG+L+AFPKLMNTGKQHTFVETESVRYVYQP++KL+M+LITTK SNILEDLETLRLFSRV+PEYC+ L++NEI E+ F LIFAFDEIVALGYRENVNLA IRTF EMDSHEE+V  AVR+TQE EAK +M+RKAKELQ  R  A +      GFGG  S + +GG  T    T ++ +   P   PA    P+RP+G  KA+KLG K K++D+FVDKL+ EG T++S+SM K+T++      P + M S+H+KIEEK+ LT GR GGLQNME+ G+++LRI+D    +I +   N D KG Q+QTHPNVDKK F + S+IGLK+  K FPVN+++GV+KWRLQT +E  IPLTINCWP+E+G+ C+V IEYELQ  +LELNDVVI IP+PSGVGAP IGE+DG+Y  D+R++ LEW +PVID+ N SGS+EF+I+G P+DFFPV VSF S K  C+  +  V Q +  SP +FS E   +V+KYE++
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGG-STAAMITETIIETDKPKVAPA----PARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
The following BLAST results are available for this feature:
BLAST of TCONS_00005479-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPD0.000e+061.43Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]
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