TCONS_00005485-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005485-protein
Unique Name	TCONS_00005485-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1497

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005485-protein ID=TCONS_00005485-protein|Name=TCONS_00005485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1497bp
MLCNLNGETLLIPDELVESESIFKTVVSLDTWNSLSVDERSDLTKLLPSF
DNHEEQTTTIKTIFNSADRDFKFGQPVTSAFVKLKGGHLHPETMEMKERC
NKLKMKNHKMKQKQYYKNLLQEVIVSRQEVLDRMYKEGAHFHDDETEKAE
EKKIAGKRCYHPTQERLESVDKKYKRILKDIAADCGDKEDVSSDEEMILD
HQKMDPTPFAISENDFQTRLKDHYKRRAVGERHPELETTNVSIADVIMRC
SNTKKPLKSSKKLLKKKFPSKVPASTLSVKPVSSSTSTKPLDPLAALATS
PTNTKPSKPSSNSDSSIKASESSHGNSSTPSAKPNKTKDLNDKLNEKKSD
SKKASSKKKSDSNHKISSSTSKAITTKPLMSSKGFPKMGCYFSLIGYIFE
KAHDKKCSMAKIQEELALWQTHKSSDLCGWKTLYSNWLPLVRYAVEYLLG
KGYGKQLPEFIPLLIPEGETEWVWTGPEFDDDDVIVPLCNHWMETLNAAL
TDSKNKKTAEESKKEALTASKPVSAVRCSTEKEREEYRLQEKERYQNAHK
PYIYKIVKEDTNVVEEVVVGPIKSVFTISDMNTCKAREHTMLVSDRPAYV
TILCLVRDAVARLPNGEGTRVDVCTMLKDSQFLNSEASDTQIHGVVSGAL
DRLHAEKDPCVKFDGVRKVWIYLHKFRTKEEFEKLHAANAAAALAKKQLS
KKNQKKKSLPLSEALNSTKDEENSTIADHSLDSNKLLATPPQTPDNKNKI
SIDGPFQRTPESEKKKNNKRKRTGSDSHQNHHQSGGIPESRSSKQPKMTA
AATDSILMSDSQLSMEREALMATQAILDPEPDDTDFLIEPSTPSNLFINT
SHSGGFSTNSSESPNIAQPFNTPVVTTRSQLTVKTTSILTSPIATSSTST
KPTKPKPQRQRSNPTKNYTPKSNNTTDVLHPTAAKQINLPSVYLKGNVFN
NLSPISSPGNLPNLLIHTLDSNKTLLSNSTTAATTKTTQSTLLQQQQLAI
SNAILLQHHKQKQQQQQQASNKQPTIPNQKLKPNDPTVQHIQKLVQLQQQ
QKALQQKQALQQKQPSPKTAPTQIQLQAIPTKLQVTQAQSKATKQQFFIS
TKSISGKPAIASLQQMINKKANSPALTVKSPTSPNATNIKQSLLSPTNAS
GKPIQANMGLALGNIPTSTLQNLNQLISSKRIHSKNVTVPGPLVNLSLPS
SNHKTIQSPTTILKQANLLANSKLPLQQKATIKEPANKPILAPNIRQSPS
NIVHQYVTINEKQHQKIRTSLAPTKKLVTPASIVTTVQNSHMQTLSLNQL
VAAARANLQTTSVRATATMSTSITSNSKIRPTGTTLQALLQVVQKPNAAG
GMTPNAQLLIPPQQLAKATGDASKFVRLPRAAVVGKTVTPSALTNITFQR
QSSGGGVTQTSKQGASVAPLKISLPKTCFSGTSPIQMSPITIGSQLRTPA
NIVFSSPSLLVTGGRTVKLASPRLTTAKAPTSTTSINSNFTKTSDQN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003112	XLOC_003112	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005485	TCONS_00005485	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025220	NFRKB_winged_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1044..1064
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 886..927
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 697..801
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1009..1035
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1475..1497
IPR025220	NFRKB winged helix-like domain	PFAM	PF14465	NFRKB_winged	coord: 391..492 e-value: 1.6E-16 score: 60.3

Blast

[Close]

BLAST of TCONS_00005485-protein vs. Swiss-Prot (Human)
Match: NFRKB (Nuclear factor related to kappa-B-binding protein OS=Homo sapiens GN=NFRKB PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 2.880e-62
Identity = 122/289 (42.21%), Postives = 176/289 (60.90%), Query Frame = 0

Query:  406 KCSMAKIQEELALWQTHKSSDLCGWKTLYSNWLPLVRYAVEYLLGKGYGKQLPE-FIPLL-IPEGETEWVWTGPEFDDDDVIVPLCNHWMETLNAALTDSKNKKTAEESKKEALTASKPVSAVRC------STEKEREEYRLQEKERYQNAHKPYIYKIVKEDTNVVEEVVVGPIKSVFTISDMNTCKAREHTMLVSDRPAYVTILCLVRDAVARLPNGEGTRVDVCTMLKDSQFLNSEASDTQIHGVVSGALDRLHAEKDPCVKFDGVRKVWIYLHKFRTKEEFEKLH 686
            + S+  ++E +  WQ+  +S L  W +   NW  LV  A++YL G+   + +P  F P +   E   +W   G   D++  +  L   W+ET + A    +N+ +++        A+ PV  VR       ST +E+  ++ QE+ RY   HK + +++         E VVGP+K VF   + +  KAREH++L SDRPAYVTIL LVRDA ARLPNGEGTR ++C +LKDSQFL  + + TQ++ VVSGALDRLH EKDPCVK+D  RK+WIYLH+ R++EEFE++H
Sbjct:  392 QASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGES--RAVPSSFSPFVEFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSSD--------ATTPVPRVRTDYVVRPSTGEEKRVFQEQERYRYSQPHKAFTFRMHGF------ESVVGPVKGVFD-KETSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICELLKDSQFLAPDVTSTQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDRSEEEFERIH 663

HSP 2 Score: 118.627 bits (296), Expect = 1.225e-26
Identity = 75/282 (26.60%), Postives = 138/282 (48.94%), Query Frame = 0

Query:    3 CNLNGETLLIPDELVESESIFKTVVSLDTWNS-LSVDERSDLTKLLPSF--DNHEEQTTTIKTIFNSADRDFKFGQPVTSAFVKLKGGHLHPETMEMKERCNKLKMKNHKMKQKQYYKNLLQEVIVSRQEVLDRMYKEGAHFHDDETEKAEEKKIAGKRCYHPTQERLESVDKKYKRILKDIAADCGDKEDVSSDEEMI--------------------------LDHQKMDPTPFAISENDFQTRLKDHYKRRAVGERHPELETTNVSIADVIMRCSNTKK 255
            C L G  + +P++L+E   IF  VVSL TW   LS  +R  L + LP F  D+ E+Q   I  +F+    +F+FG P+  A    + GH +PE ++ ++ C K + K +   Q+QY+  LL++++ SR ++L+   + G            +K+ +  R     +ER     ++Y ++L+++  +CGD   +SSDEE +                           D +  D     + ++D +  LK H+++R     HP+L T ++++ D++ R +  +K
Sbjct:   29 CLLGGTRVSLPEDLLEDPEIFFDVVSLSTWQEVLSDSQREHLQQFLPQFPEDSAEQQNELILALFSG--ENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQQQYFHRLLKQILASRSDLLEMARRSGPAL------PFRQKRPSPSRT---PEEREWRTQQRYLKVLREVKEECGDTA-LSSDEEDLSSWLPSSPARSPSPAVPLRVVPTLSTTDMKTADKV--ELGDSDLKIMLKKHHEKRKHQPDHPDLLTGDLTLNDIMTRVNAGRK 296

The following BLAST results are available for this feature:

BLAST of TCONS_00005485-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005485-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NFRKB	2.880e-62	42.21	Nuclear factor related to kappa-B-binding protein ...	[more]

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TCONS_00005485-protein (polypeptide) - C. hemisphaerica