TCONS_00005498-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005498-protein
Unique NameTCONS_00005498-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005498-protein ID=TCONS_00005498-protein|Name=TCONS_00005498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MSNINSWPILSFIPAEIAKNVIKAFVFGGAGNEAIIVVSNGDVYALGFNG
NGCLGIGNGNSTLEPRKIDILCQKNLVDFAYGMGPHILTVTESGELYSWG
HGGYGQLGHVEDEKTKPVLVPLQKKVVQIACGSYHSIALTQEGEIYAWGS
NNCGQLGLGVGTNQQTPRKVNGQLSNYNKKVTSVACGQSFTIVLTDEGEL
YSWGYNGNGQLGIGNNTNQQQPAKVAGLNGKYIQKIACGMAHVLALTDTG
ELYSWGANSYGQLGLDTTLNTSTPTLVPTTEETARWTDIAAHHYNHISAA
VLLSGKICMWGQCHGLTLLSPRQVAINSLDAVFACFGMPQIMFRFTEIDH
EEPQTLKDTVKRAFDDATSSDLAFVIDGKSIHVHKALLKIRCEYFRNMLQ
THWEESNMSEIEVTQFSYDVYRAFLLFLYTDKVDIGSEDAISLLHLADSY
CEQRLKEICEDLIKKSVSISNVSHLLAAAIKYNASDLEEFCFRFSMNHLT
AVTQTETFKQLDGDTVRDFIIKAGASGAFKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003118XLOC_003118Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005498TCONS_00005498Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
IPR009091RCC1/BLIP-II
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 145..161
score: 37.25
coord: 95..111
score: 38.24
coord: 198..214
score: 27.45
coord: 236..252
score: 42.16
coord: 252..266
score: 41.11
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 197..246
e-value: 1.9E-14
score: 53.9
coord: 250..294
e-value: 1.5E-10
score: 41.4
coord: 40..82
e-value: 2.5E-5
score: 24.7
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 129..139
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 198..249
score: 16.956
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 94..142
score: 17.82
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 250..302
score: 11.65
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 41..92
score: 9.338
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 143..197
score: 16.393
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 370..467
e-value: 2.9E-21
score: 86.7
IPR000210BTB/POZ domainPFAMPF00651BTBcoord: 364..466
e-value: 2.0E-22
score: 79.4
IPR000210BTB/POZ domainPROSITEPS50097BTBcoord: 370..437
score: 17.79
NoneNo IPR availablePFAMPF13540RCC1_2coord: 126..155
e-value: 6.6E-14
score: 51.2
NoneNo IPR availableGENE3D3.30.710.10coord: 355..507
e-value: 2.1E-38
score: 131.1
NoneNo IPR availableGENE3D2.130.10.30coord: 14..226
e-value: 6.0E-68
score: 229.1
NoneNo IPR availableGENE3D2.130.10.30coord: 227..341
e-value: 3.4E-27
score: 94.8
NoneNo IPR availableCDDcd14821SPOP_C_likecoord: 467..523
e-value: 1.23655E-12
score: 62.1836
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 353..465
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 31..314

Blast
[Close]
BLAST of TCONS_00005498-protein vs. Swiss-Prot (Human)
Match: RCBT1 (RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1 PE=1 SV=1)

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 265/535 (49.53%), Postives = 360/535 (67.29%), Query Frame = 0 
Query:    1 MSNINSWPILSFI-PAEIAKNVIKAFVFGGAGNEAIIVVSNGDVYALGFNGNGCLGIGNGNSTLEPRKIDILCQKNLVDFAYGMGPHILTVTESGELYSWGHGGYGQLGH-VEDEKTKPVLVP---LQKKVVQIACGSYHSIALTQEGEIYAWGSNNCGQLGLGVGTNQQTPRKVNGQLSNYNKKVTSVACGQSFTIVLTDEGELYSWGYNGNGQLGIGNNTNQQQPAKVAGLNGKYIQKIACGMAHVLALTDTGELYSWGANSYGQLGLDTTLNTSTPTLVPTTEETARWTDIAAHHYNHISAAVLLSGKICMWGQCHGLTLLSPRQVAINSLDAVFACFGMPQIMFRFTEIDHEEPQTLKDTVKRAFDDATSSDLAFVIDGKSIHVHKALLKIRCEYFRNMLQTHWEESNMSEIEVTQFSYDVYRAFLLFLYTDKVDIGSEDAISLLHLADSYCEQRLKEICEDLIKKSVSISNVSHLLAAAIKYNASDLEEFCFRFSMNHLTAVTQTETFKQLDGDTVRDFIIKAGASGAFK 530
            M ++  WPI + + P EIA ++ KA VFG + +EA+ V  N +V+  G N + CLG G+  STL P+K++ LC K +   +YG GPH+L  TE G +Y+WGH GY QLG+   ++   PV V    L K+VV++ACGS+HS+AL  +GE++AWG NNCGQ+G G   NQ TPRKV   L  + K+V  +ACGQ+ ++ + D GE+Y WGYNGNGQLG+GNN NQ  P +VA L+   + +I CG AH LALTD G LY+WGAN+YGQLG     N  +P  +   +E  R  +IAA H  H SAA    G + MWGQC G +++ P     +  D VFACF  P + +R   ++HE+  T+ +++K+ FD   ++DL F IDGK IHVHKA+LKIRCE+FR+M Q++W E     IE+ QFSY VYRAFL +LYTD VD+  EDAI LL LA SYCE RLK++C+ +IK+ +++ N   L +AA++Y+A DLEEFCF+F +NHLT VTQT  F Q+DG  +++FI KA   GAFK
Sbjct:    1 MVDVGKWPIFTLLSPQEIA-SIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCL--HIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKE--RVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKKLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFK 530
The following BLAST results are available for this feature:
BLAST of TCONS_00005498-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCBT10.000e+049.53RCC1 and BTB domain-containing protein 1 OS=Homo s... [more]
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