TCONS_00005501-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005501-protein
Unique NameTCONS_00005501-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005501-protein ID=TCONS_00005501-protein|Name=TCONS_00005501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MKEYKVVVLGSGGVGKSALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSP
SILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQI
VRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTT
HNVNDVFAEIVRRINIVNQKQGKRKCCNIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003120XLOC_003120Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005501TCONS_00005501Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 27..43
score: 32.76
coord: 44..66
score: 39.09
coord: 4..25
score: 47.5
coord: 142..164
score: 43.58
coord: 107..120
score: 52.83
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 6..167
e-value: 3.0E-12
score: 37.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 4..167
e-value: 9.8E-36
score: 134.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 1..167
e-value: 5.9E-106
score: 368.0
NoneNo IPR availableGENE3D3.40.50.300coord: 67..165
e-value: 1.8E-33
score: 114.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 2..66
e-value: 2.2E-22
score: 78.3
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 5..164
e-value: 1.0E-56
score: 190.9
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 1..160
e-value: 1.5E-32
score: 110.6
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 1..180
score: 38.721
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..167

Blast
[Close]
BLAST of TCONS_00005501-protein vs. Swiss-Prot (Human)
Match: RAP2B (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.311e-85
Identity = 127/178 (71.35%), Postives = 148/178 (83.15%), Query Frame = 0 
Query:    1 MKEYKVVVLGSGGVGKSALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSPSILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQIVRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTTHNVNDVFAEIVRRINIVNQKQGKRKCCN 178
            M+EYKVVVLGSGGVGKSALTVQFV+  F+EKYDPTIEDFYRK IEVD SPS+LEILDTAGTEQFASMRDLYIKNGQGF+LVYS+ N+Q+ QD+ PMRDQI+R+K  E VPMILVGNK D+  EREV+  EG+ LAE W CPF ETSAK   +V+++FAEIVR++N   Q  G   CC+
Sbjct:    1 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCS 178
The following BLAST results are available for this feature:
BLAST of TCONS_00005501-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAP2B5.311e-8571.35Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
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