TCONS_00005536-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005536-protein
Unique NameTCONS_00005536-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005536-protein ID=TCONS_00005536-protein|Name=TCONS_00005536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
MSHLLLGILLTLFFVPFVESCPQGCHCSAMSAKCANLPTHVAMERTLSEM
PENITRLDLSKNGLTSFKARLLSNLTRLKVLYLNENKLTQLPQNLSVHVP
TLRKLYMSDNYLLKSLSRQSLETAFNLEKIYLRDSGILRLKADDFYNNTA
LLHLNIQHNRIRRIDVNAFTGLRRLRFLHLDNNIIRELPKHVFNQLINLN
KMSVSSNSISSIPNHLFAQNRQLKIIALNTNLINHLGSASFQDIGNLTNI
YLQNNLIRNFSSDTFQGTHISDSINLNENPLHCDCYLTSLKLKWLRVDGK
IKGHCSNPPELTGRPIAWITRKELNCTECDFNGCQNNATCVIEADQYNCV
CTAGFEGGLCETPISVRLKKESDLGWIVTTVVCIFVVVLGVIFAVWYYRK
RKGRELCTQKQCCCCFFAVGGIGVIGVFVIVQFVSLMYEEDSHV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003154XLOC_003154Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005536TCONS_00005536Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 75..98
e-value: 0.0043
score: 26.3
coord: 172..195
e-value: 0.084
score: 22.0
coord: 196..219
e-value: 1.2
score: 18.2
coord: 50..74
e-value: 180.0
score: 2.9
coord: 149..171
e-value: 16.0
score: 11.7
coord: 221..243
e-value: 240.0
score: 2.0
coord: 244..267
e-value: 6.2
score: 15.0
IPR000742EGF-like domainSMARTSM00181egf_5coord: 328..361
e-value: 2.2E-5
score: 33.9
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 325..361
score: 14.103
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 138..324
e-value: 7.5E-29
score: 99.9
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 16..137
e-value: 3.3E-18
score: 64.9
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 53..285
NoneNo IPR availableGENE3D2.10.25.10coord: 325..366
e-value: 4.9E-9
score: 35.6
NoneNo IPR availableCDDcd00054EGF_CAcoord: 328..361
e-value: 2.74022E-5
score: 40.3126
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 323..362
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 221..281
e-value: 4.2E-7
score: 29.5
coord: 126..183
e-value: 2.6E-12
score: 46.2
coord: 53..112
e-value: 1.7E-10
score: 40.4
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 349..360
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 349..360

Blast
[Close]
BLAST of TCONS_00005536-protein vs. Swiss-Prot (Human)
Match: CHADL (Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.135e-25
Identity = 78/284 (27.46%), Postives = 133/284 (46.83%), Query Frame = 0 
Query:   53 NITRLDLSKNGLTSFKARLLSNLTRLKVLYLNENKLTQLPQNLSVHVPTLRKLYMSDNYLLKSLSRQSLETAFNLEKIYLRDSGILRLKADDFYNNTALLHLNIQHNRIRRIDVNAFTGLRRLRFLHLDNNIIRELPKHVFNQLINLNKMSVSSNSISSIPNHLFAQ-NRQLKIIALNTNLINHLGSASFQDIG-NLTNIYLQNNLIRNFSSDTFQGTHISDSINLNENPLHCDCYLTSLKLKWLR-VDGKIKGHCSNPPELTGRPI-----------AWITRK 322
            ++  L L   G+   +A  L+ L RL  LYL++N+L  L        P L  LY+  N  L+ +   +L    +L  ++L+D+ + RL   D     AL  + +  NRI  + + A    R L  LHLD N +RE+P      L  L ++ +S N + ++ +  F    R L+ + LN++ +  +   +F  +G  L +++LQ N +R   +         + I+L+ NP HCDC L  L  +WL  ++ ++   C+ PP   G+ +            W  RK
Sbjct:  450 HLVSLHLQHCGIAELEAGALAGLGRLIYLYLSDNQLAGLSAAALEGAPRLGYLYLERNRFLQ-VPGAALRALPSLFSLHLQDNAVDRLAPGDLGRTRALRWVYLSGNRITEVSLGALGPARELEKLHLDRNQLREVPTGALEGLPALLELQLSGNPLRALRDGAFQPVGRSLQHLFLNSSGLEQICPGAFSGLGPGLQSLHLQKNQLRALPA--LPSLSQLELIDLSSNPFHCDCQLLPLH-RWLTGLNLRVGATCATPPNARGQRVKAAAAVFEDCPGWAARK 729

HSP 2 Score: 87.0409 bits (214), Expect = 3.108e-18
Identity = 83/335 (24.78%), Postives = 135/335 (40.30%), Query Frame = 0 
Query:   21 CPQGCHCSAMSAKCANLPTHVAME-RTLSEMPENIT----RLDLSKNGLTSFKARLLSNLTRLKVLYLNENKLTQLPQNLSVHVPTLRKLYMSDNYLLKSLSRQSLETAFNLEKIYLRDSGILRLKADDFYNNTALLHLNIQHNRIRRIDVNAFTGLRRLRFLHLDNNIIRELPKHVFNQLINLNKMSVSSNSISSIPNHLFAQNRQLKIIALNTNLINHLGSASFQDIGNLTNIYLQNNLIRNFSSDTF----------------------QGTHISDSINLNENPLHCDCYLTSLKLKWL-RVDGKIKGHCSNPPELTGRPIAWITRKELNCT 327
            CPQ C C        N   HVA   + L+E+P+ I     RLDL  N L    A     +  L  L L   ++  + +     +  L  L ++ N+L + L +++L+   +L ++ L  + +  L+   F    AL  LN+ HN +  +   AF GL R+R+L L +N +  L       L  L ++S+  N + ++P  + +Q R L  + L  N + + G      +  L  + L    ++      F                      QG      + L  NPL C C    L L+WL R   +  G C  P  L G  +  +   +L C 
Sbjct:   33 CPQACICD-------NSRRHVACRYQNLTEVPDAIPELTQRLDLQGNLLKVIPAAAFQGVPHLTHLDLRHCEVELVAEGAFRGLGRLLLLNLASNHL-RELPQEALDGLGSLRRLELEGNALEELRPGTFGALGALATLNLAHNALVYLPAMAFQGLLRVRWLRLSHNALSVLAPEALAGLPALRRLSLHHNELQALPGPVLSQARGLARLELGHNPLTYAGEEDGLALPGLRELLLDGGALQALGPRAFAHCPRLHTLDLRGNQLDTLPPLQGPGQLRRLRLQGNPLWCGCQARPL-LEWLARARVRSDGACQGPRRLRGEALDALRPWDLRCP 358
The following BLAST results are available for this feature:
BLAST of TCONS_00005536-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHADL4.135e-2527.46Chondroadherin-like protein OS=Homo sapiens GN=CHA... [more]
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