TCONS_00005537-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005537-protein
Unique NameTCONS_00005537-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005537-protein ID=TCONS_00005537-protein|Name=TCONS_00005537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MKFFLILLVFCLVSSTVQECPFQCECADHKVKCSLLTDQSVAGVLRRLST
NSIKKLDLSKNVLTSFNMVLLKDFTKLETLVLNENKLSSVPSGISHHVPS
LKKLHIRHNSLLRNLTKHALGGAYNLEVLDVKDSSISNLLHDGIFYNNSK
LTVLNLASNKIAAMEKYVFAGLRKLVSLDLNNNRISDLRPGTFKPLNSIQ
RILINSNNLIHIHNQVFTGLKSVKLISLTGNQLRALGPQAFQSLPNVTTI
SLADNSLESFSKSAFKYSYISKEIDLRGNPIHCSCFITSFELRTLNSQGK
LNGACLTPLQFTGRSLKSIKRNELGCTTCDFNECKNNATCIIKDDYYFCQ
CLKGYQGKFCQTITEDEDSTILWVVILIIIVLVAVICSVIGWWYHRKQKG
LSFCVITKTQCCCCCFITVVILCLLLFFMLRIVSYMYEHA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003155XLOC_003155Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005537TCONS_00005537Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 220..243
e-value: 1.6
score: 17.8
coord: 74..97
e-value: 0.079
score: 22.1
coord: 196..219
e-value: 44.0
score: 8.0
coord: 149..171
e-value: 23.0
score: 10.3
coord: 244..267
e-value: 19.0
score: 11.0
coord: 98..122
e-value: 88.0
score: 5.5
coord: 172..195
e-value: 1.7E-4
score: 31.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 9..160
e-value: 9.4E-26
score: 89.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 161..330
e-value: 3.1E-30
score: 104.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 51..295
NoneNo IPR availableGENE3D2.10.25.10coord: 331..363
e-value: 1.6E-8
score: 34.1
NoneNo IPR availableCDDcd00054EGF_CAcoord: 330..361
e-value: 5.41424E-4
score: 36.4606
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 323..363
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 52..111
e-value: 4.7E-8
score: 32.6
coord: 173..233
e-value: 1.2E-12
score: 47.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 52..72
score: 5.44
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 150..171
score: 6.31
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 76..97
score: 6.896
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 246..267
score: 5.071
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 100..119
score: 4.616
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 174..195
score: 7.912
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 349..360
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 349..360
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 327..361
score: 14.103

Blast
[Close]
BLAST of TCONS_00005537-protein vs. Swiss-Prot (Human)
Match: CPN2 (Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.034e-21
Identity = 82/300 (27.33%), Postives = 145/300 (48.33%), Query Frame = 0 
Query:   36 LTDQSVAGVLRRL--STNSIKKLDLSKNVLTSFNMVLLKDFTKLETLVLNENKLSSVPSGISHHVPSLKKLHIRHNSLLRNLTKHALGGAYNLEVLDVKDSSISNLLHDGIFYNNSKLTVLNLASNKIAAMEKYVFAGLRKLVSLDLNNNRISDLRPGTFKPLNSIQRILINSNNLIHIHNQVFTGLKSVKLISLTGNQLRALGPQAFQSLPNVTTISLADNSLESFSKSAFKYSYISKEIDLRGNPIHCSC-------FITSFELRTLNSQGKLNGACLTPLQFTGRSLKSIKRNELGC 326
            L    +  + RRL      +K L+L++N+L      L    T L+TL L+ N LS +P G+   + SL++L +  N++   L        + LE L ++ ++I++L    IF +   LT L+L  N +  +   +FA    LV L L +N++  +  GTF  L++++ ++++ N + H+   +F  L+ +  + L  N L AL P  FQ+L  +  +SL+ N L +  +  F  +Y    + L GNP  C C       ++  +  R LN Q      C  P    G+ + ++   +L C
Sbjct:  152 LQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNI-SELPPQVFSQLFCLERLWLQRNAITHL-PLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTY----CAGPAYLKGQVVPALNEKQLVC 445
The following BLAST results are available for this feature:
BLAST of TCONS_00005537-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPN22.034e-2127.33Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CP... [more]
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