TCONS_00005626-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005626-protein
Unique NameTCONS_00005626-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005626-protein ID=TCONS_00005626-protein|Name=TCONS_00005626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNF
LHVFIIIQPQILHGELFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRW
LYAKIINGERASYRSPKFASMQERTRRQLLEELVHDQACKEVQPSLKFSK
NPFQRLLPLRHSFTRSSPHTPSLQRSMSFAADHIGITSPADQLRRDLKRS
LACGISQYHDVIFLVGKERGGSVPAVKALLAMKSRVFNEMFFPGSYQSSA
PRRRSSVLSRVSPHYLSQHLRSSKRLSDFWKRNNNTTANNGSTTSTTTAS
SSNDSSPSKNNNPSPESSIVDIKEGQLSSKLQVTEFDMEEFSALIEYIQT
GSCVITPETVVGLACAAEYYQVDELIDLCERSCQQMCDIRNLPVLLTSIR
QHILRYSIAIKLEQYVKSFTESCDNELFDFFDISSLSHEVFDCLLTSTSG
VDDSKKREAIEEWHERLSTFLNANESVRLKDLLLQHADIDNYIEDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005626TCONS_00005626Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR000331Rap_GAP_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005096GTPase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0051056regulation of small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051056 regulation of small GTPase mediated signal transduction
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 209..387
e-value: 5.1E-15
score: 65.9
IPR000210BTB/POZ domainPFAMPF00651BTBcoord: 328..385
e-value: 8.4E-7
score: 29.1
coord: 207..249
e-value: 9.2E-5
score: 22.5
IPR000331Rap GTPase activating protein domainPFAMPF02145Rap_GAPcoord: 1..127
e-value: 1.7E-39
score: 135.2
IPR000331Rap GTPase activating protein domainPROSITEPS50085RAPGAPcoord: 1..133
score: 38.224
IPR000331Rap GTPase activating protein domainSUPERFAMILY111347Rap/Ran-GAPcoord: 1..136
NoneNo IPR availableGENE3D3.30.710.10coord: 175..388
e-value: 2.8E-22
score: 78.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..321
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 190..241
coord: 324..383

Blast
[Close]
BLAST of TCONS_00005626-protein vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 8.891e-34
Identity = 66/137 (48.18%), Postives = 88/137 (64.23%), Query Frame = 0 
Query:    1 MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGE-LFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRWLYAKIINGERASYRSPKFASMQERTRRQLLEELVHD 136
            +MFHVST LP  E D Q+LQRKRHIGNDIV ++F      F P+ I SNFLH ++++Q +    +   YKV V +RD V  +GPPLP   +F+    FQ +L  K+IN E A Y++ KFA ++ERTR  LLE L  +
Sbjct:  264 IMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEE 400
The following BLAST results are available for this feature:
BLAST of TCONS_00005626-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP18.891e-3448.18Rap1 GTPase-activating protein 1 OS=Homo sapiens G... [more]
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