TCONS_00005650-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005650-protein
Unique NameTCONS_00005650-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005650-protein ID=TCONS_00005650-protein|Name=TCONS_00005650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MKCKLAVVTEDVVAQSKKFSDEDHLKECKKLEAKNDELKKTINNMKQEGD
ALLGEMEFTGQAFEEMQDQNIQLMQQLREKDDANLKLMSERIKSTQIQKL
LREEKEVLLEKISALTSRQSSIDDLVKRYEEREKSLQSTLTVLEKENLLR
QQAGECHKRKAVEIGTQCQEMAFRNETLSKQCDELTKSTQDRGNRLEEEI
FKFNRIQEENIGLKKKLDKAKRMEYLGASDEILVEEVKMYKSKLMCPICN
TRPKDAILTKCFHVFCIDCLKTRYDTRQRKCPKCNATFGNNDFHKMYM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003194XLOC_003194Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005650TCONS_00005650Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableCOILSCoilCoilcoord: 203..223
NoneNo IPR availableCOILSCoilCoilcoord: 21..55
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 243..286
e-value: 1.8E-9
score: 37.2
NoneNo IPR availableGENE3D1.20.5.1000coord: 20..94
e-value: 0.0014
score: 18.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 245..289
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 246..284
e-value: 4.4E-6
score: 36.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 246..285
score: 11.442
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 245..288
e-value: 6.6411E-9
score: 49.7516
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 211..296
e-value: 1.4E-11
score: 43.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 261..270

Blast
[Close]
BLAST of TCONS_00005650-protein vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 273.092 bits (697), Expect = 1.585e-84
Identity = 140/283 (49.47%), Postives = 198/283 (69.96%), Query Frame = 0 
Query:   16 SKKFSDEDHLKECKKLEAKNDELKKTINNMKQEGDALLGEMEFTGQAFEEMQDQNIQLMQQLREKDDANLKLMSERIKSTQIQKLLREEKEVLLEKISALTSRQSSIDDLVKRYEEREKSLQSTLTVLEKENLLRQQAGECHKRKAVEIGTQCQEMAFRNETLSKQCDELTKSTQDRGNRLEEEIFKFNRIQEENIGLKKKLDKAKRMEYLGASDEILVEEVKMYKSKLMCPICNTRPKDAILTKCFHVFCIDCLKTRYDTRQRKCPKCNATFGNNDFHKMYM 298
            SKK +DED L+  ++ E + + L++ +   KQE +ALL EM+ TGQAFE+MQ+QN +L+QQLREKDDAN KLMSERIK+ QI KLLREEK+ L E++  L S+  +    V++ EE+E++LQ +L  +EKE  LR QA E +KRKAVE     +++  + E +  +  E+     +     E+E F   R QE+   L++KL+K +++E    +DEIL EE+K YK++L CP CNTR KDA+LTKCFHVFC +C++ RY+ RQRKCPKCNA FG +DFH++Y+
Sbjct:  718 SKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
The following BLAST results are available for this feature:
BLAST of TCONS_00005650-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B1.585e-8449.47E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
back to top