TCONS_00005740-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005740-protein
Unique NameTCONS_00005740-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005740-protein ID=TCONS_00005740-protein|Name=TCONS_00005740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1184bp
MYIKGIVLDGFKSYAKRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLG
ITNLTHVRATNLQQLIYKSGQKGVTKATVTITFDNTDKKQSPMGYETFDE
ITISRQIVLGGRNKYLINGCNANNTRVQDLFRSVQLNVNNPHFLIMQGRI
TKVLNMKPPEILSMIEEAAGTRMYESKKQQAIKTMEKKQSKLNDIEAVLN
EEITPTIKKLKEERSSYLEYQKVMRVIEHLTRLYVAYEFTKAEEFKEKAG
SELEKMNEAISTLSARNQEISKEIARIDGEIDELQRKKDEESGNVLKELE
KRVDELSKIEVKATSDVKHANESLNAEKKKLRQLQKNNTDSTSQLQSKEK
LIEKLEHQISSFEERNTADAQAVTKAQDHYHAVSAGLSSNDDGEDKTLAD
QLMECKNAISKADTEIKQAQIKLKHEEGELKKKQADLKSTEKGYEKDKVA
FEAMKKDLTKIENQLKTLNYRDGQEDELIARKRKLSQEVSRLQNIVETLE
ARFPQLQFEYHDPEPRFDRRKVKGLVANLINIKDVKYATALQVTAGGRIY
NVVVDTDRTGKQLLQNGRLQRKVTLIPLNKIAARSISDTVVQSAKSCVGA
ANVDTALSLVGYDKEIEGAMKFVFGSSFVAADLNSAKKVAFDPNVKTRTV
TLDGDVFDPSGTLSGGARRQQQSILASIQELQDARTELSNKEKELRNVEK
ELEGIKSVAERYNKLSTDLDMKTREIELVEDRLKQSTHHQKVEELDAYKA
SVEQQKTTIQQGKETMAAATKKSKDLDQKMKEKSAHREKELKSAETALTK
AKQKAETSKKEFKTKQQELEEASLEIEALRAELNGLEEQLTAAEETITKM
SEECERLSDVANEKKTETKEAEQALAQQKETLRLCSEKINEKSKEKNAFV
KETSSNQLKLKEMEHKILKVNKDAQDAAQKVEYMLEKYDWIANEKQYFGQ
ENTAYDFQANDPKDAAKQLTRLNETKEKLGKSVNMRAMNMLGKAEEKYND
LMKKKKIVENDKKKIEEVIKDLDQKKNEALKIASAKVNKDFGSIFSTLLP
GSDAKLAPPEGMTVLDGLEVKVAFGSVWKESLTELSGGQRSLVALSLILS
MLLFKPAPIYILDEVDAALDLSHTQNIGQMLRQHFRHSQFIVVSLKDGMF
NNANVLFKTKFVDGVSTVNRFVQNSSTRDTLKKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003256XLOC_003256Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005740TCONS_00005740Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010935SMC_hinge
IPR003395RecF/RecN/SMC_N
IPR024704SMC
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0051276chromosome organization
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
cellular_component GO:0005694 chromosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 674..732
NoneNo IPR availableCOILSCoilCoilcoord: 178..198
NoneNo IPR availableCOILSCoilCoilcoord: 910..930
NoneNo IPR availableCOILSCoilCoilcoord: 984..1032
NoneNo IPR availableCOILSCoilCoilcoord: 451..471
NoneNo IPR availableCOILSCoilCoilcoord: 402..443
NoneNo IPR availableCOILSCoilCoilcoord: 791..895
NoneNo IPR availableCOILSCoilCoilcoord: 475..502
NoneNo IPR availableCOILSCoilCoilcoord: 246..365
NoneNo IPR availableGENE3D3.40.50.300coord: 895..1176
e-value: 2.5E-23
score: 82.3
NoneNo IPR availableGENE3D1.20.1170.10coord: 392..779
e-value: 4.2E-14
score: 51.7
NoneNo IPR availableGENE3D1.10.287.620coord: 291..391
e-value: 0.014
score: 14.3
NoneNo IPR availableGENE3D1.20.5.340coord: 173..290
e-value: 0.0052
score: 16.1
NoneNo IPR availableGENE3D3.40.50.300coord: 1..172
e-value: 1.0E-32
score: 113.0
NoneNo IPR availableGENE3D1.20.120.330coord: 780..894
e-value: 6.8E-5
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 762..816
NoneNo IPR availableCDDcd03273ABC_SMC2_eukcoord: 1..172
e-value: 3.51376E-98
score: 313.08
IPR010935SMCs flexible hingeSMARTSM00968SMC_hinge_2coord: 520..640
e-value: 5.0E-29
score: 112.4
IPR010935SMCs flexible hingePFAMPF06470SMC_hingecoord: 521..640
e-value: 2.7E-20
score: 72.7
IPR010935SMCs flexible hingeSUPERFAMILY75553Smc hinge domaincoord: 480..688
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 2..1163
e-value: 2.8E-52
score: 177.2
IPR024704Structural maintenance of chromosomes proteinPIRSFPIRSF005719SMCcoord: 1..1157
e-value: 4.0E-175
score: 582.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..200
coord: 1060..1158

Blast
[Close]
BLAST of TCONS_00005740-protein vs. Swiss-Prot (Human)
Match: SMC2 (Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2)

HSP 1 Score: 1380.16 bits (3571), Expect = 0.000e+0
Identity = 688/1173 (58.65%), Postives = 894/1173 (76.21%), Query Frame = 0 
Query:    1 MYIKGIVLDGFKSYAKRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGITNLTHVRATNLQQLIYKSGQKGVTKATVTITFDNTDKKQSPMGYETFDEITISRQIVLGGRNKYLINGCNANNTRVQDLFRSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYESKKQQAIKTMEKKQSKLNDIEAVLNEEITPTIKKLKEERSSYLEYQKVMRVIEHLTRLYVAYEFTKAEEFKEKAGSELEKMNEAISTLSARNQEISKEIARIDGEIDELQRKKDEESGNVLKELEKRVDELSKIEVKATSDVKHANESLNAEKKKLRQLQKNNTDSTSQLQSKEKLIEKLEHQISSFEERNTADAQAVTKAQDHYHAVSAGLSSNDDGEDKTLADQLMECKNAISKADTEIKQAQIKLKHEEGELKKKQADLKSTEKGYEKDKVAFEAMKKDLTKIENQLKTLNYRDGQEDELIARKRKLSQEVSRLQNIVETLEARFPQLQFEYHDPEPRFDRRKVKGLVANLINIKDVKYATALQVTAGGRIYNVVVDTDRTGKQLLQNGRLQRKVTLIPLNKIAARSISDTVVQSAKSCVGAANVDTALSLVGYDKEIEGAMKFVFGSSFVAADLNSAKKVAFDPNVKTRTVTLDGDVFDPSGTLSGGARRQQQSILASIQELQDARTELSNKEKELRNVEKELEGIKSVAERYNKLSTDLDMKTREIELVEDRLKQSTHHQKVEELDAYKASVEQQKTTIQQGKETMAAATKKSKDLDQKMKEKSAHREKELKSAETALTKAKQKAETSKKEFKTKQQELEEASLEIEALRAELNGLEEQLTAAEETITKMSEECERLSDVANEKKTETKEAEQALAQQKETLRLCSEKINEKSKEKNAFVKETSSNQLKLKEMEHKILKVNKDAQDAAQKVEYMLEKYDWIANEKQYFGQENTAYDFQANDPKDAAKQLTRLNETKEKLGKSVNMRAMNMLGKAEEKYNDLMKKKKIVENDKKKIEEVIKDLDQKKNEALKIASAKVNKDFGSIFSTLLPGSDAKLAPPEGMTVLDGLEVKVAFGSVWKESLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRQHFRHSQFIVVSLKDGMFNNANVLFKTKFVDGVSTVNRFVQ 1173
            M+IK I+L+GFKSYA+RTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGI+NL+ VRA+NLQ L+YK+GQ G+TKA+V+ITFDN+DKKQSP+G+E  DEIT++RQ+V+GGRNKYLING NANNTRVQDLF SV LNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYE KK  A KT+EKK++KL +I+ +L EEITPTI+KLKEERSSYLEYQKVMR IEHL+RLY+AY+F  AE+ K ++  EL++M + +  L     E  K+I  ++ EI+EL+++KD+E+G +L+ LE  + E  ++  K+ S      ++L  E+ K ++L+KN  + +  L +KEK ++K+   + + +E +  DA+A+  AQ H++AVSAGLSSN+DG + TLA Q+M CKN ISKA TE KQAQ+KLKH + ELK KQA++K  + GY KD+ A EA+K+   K+E ++K LNY + +E+ L+ ++R+LS+++ RL+   E L ARFP L+F Y DPE  ++R  VKGLVA+LI++KD    TAL++ AG R+YNVVVDT+ TGK+LL+ G L+R+ T+IPLNKI+AR I+   ++ A++ VG  NV  ALSLV Y  E++ AM+FVFG++FV  ++++AKKVAFD  + TRTVTL GDVFDP GTLSGGAR Q  SIL   QEL+D + EL  KE ELR +E+EL G+K+ AE+Y +L    +MKT E +L++ +L+QS++H++ EELDA K ++E+ + T++  KE    A +K + L+ KMK   A RE+ELK A+  L  AK KA+ S K+ K KQQE+E  +LE+E L+ E    ++QL A  E I     + E ++    + K    +A++ + +QKE +      I  K  E     ++ + +QLK+KE++H I K  ++A+D A KV  ML+ YDWI  E+  FGQ N+AYDF+ N+PK+A ++L +L E KEKLG++VNMRAMN+L +AEE+YNDLMKKK+IVENDK KI   I+DLDQKKN+AL IA  KVNKDFGSIFSTLLPG++A LAPPEG TVLDGLE KVA G+ WKE+LTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLR HF HSQFIVVSLK+GMFNNANVLFKTKFVDGVSTV RF Q
Sbjct:    1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLHALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQMKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTALELVAGERLYNVVVDTEVTGKKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVEYKPELQKAMEFVFGTTFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEEELAGLKNTAEKYRQLKQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHKEQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNPKEAGQRLQKLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKKKRIVENDKSKILTTIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQ 1173
The following BLAST results are available for this feature:
BLAST of TCONS_00005740-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMC20.000e+058.65Structural maintenance of chromosomes protein 2 OS... [more]
back to top