TCONS_00046139-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046139-protein
Unique NameTCONS_00046139-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046139-protein ID=TCONS_00046139-protein|Name=TCONS_00046139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MDEGSPEKEKLAIKSGSPQSPRCLKPLDYTFMCLTSFSDCLEEEPRGSKP
LKSKEPIIEDDGEQVRKRKTNALRLSNNVLTEWGGFLDTVEKIVENPADL
EWIDVSFNDLTTIDSCLLSFPKLKVLYLHGNGIEKINEVDKLTGLEHLRT
LTLHGNPVEDSRKGGYRQYVLSRLPLLKTFDFSGVTQSDRASAHTWSQMV
KGKRKKKVEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029476XLOC_029476Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046139TCONS_00046139Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 119..207
e-value: 9.7E-13
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 8..210
e-value: 1.3E-20
score: 72.5
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 71..188
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 147..168
score: 4.624
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 122..143
score: 8.474
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 99..120
score: 5.479
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 69..90
score: 4.632

Blast
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BLAST of TCONS_00046139-protein vs. Swiss-Prot (Human)
Match: LRC51 (Leucine-rich repeat-containing protein 51 OS=Homo sapiens GN=LRTOMT PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.664e-50
Identity = 87/187 (46.52%), Postives = 119/187 (63.64%), Query Frame = 0 
Query:   26 PLDYTFMCLTSFSDCLEEEPR-GSKPLKSKEPIIEDDGEQVRKRKTNALRLSNNVLTEWGGFLDTVEKIVENPADLEWIDVSFNDLTTIDSCLLSFPKLKVLYLHGNGIEKINEVDKLTGLEHLRTLTLHGNPVEDSRKGGYRQYVLSRLPLLKTFDFSGVTQSDRASAHTWSQM-VKGKRKKKVEN 210
            PLDY+F  +    D + EEPR G +PLK  +           K  T +L L+NNVL +   F     +++E+P +L WID+SFNDLT+ID  L +F  L VLYLHGN I+++ EV+KL  L  LR+LTLHGNP+E+ +  GYRQYVL  L  + TFDFSGVT++DR +A  W +M +K K+    +N
Sbjct:   15 PLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---------GKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEK--GYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKKAWTKQN 190
The following BLAST results are available for this feature:
BLAST of TCONS_00046139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC515.664e-5046.52Leucine-rich repeat-containing protein 51 OS=Homo ... [more]
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