TCONS_00046158-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046158-protein
Unique NameTCONS_00046158-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length926

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046158-protein ID=TCONS_00046158-protein|Name=TCONS_00046158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
VHVIDDDFFVYCLFVESEQQLNRRIPKVRFISASHVDLRSEMTFEQVSRD
YIMRKARFAHSDMSLSSQEMEAGTVVFQNPVSSQDIHLEEQTLEDCESTS
LIDAEKISASKLQGLDGVTYLPRCVKYIAWALCFSVIVVAGFFTLLYGLS
FGKNDQEKWLFAFFVSVFADICINQPIKVLLLASVLTLIFRELNDELILT
EIHNYRNIDFGDDRNSFHKLSQSAETPDAQPKRPEPPSKEYIEEMRRQRL
YEQKMINIVIEIFTYTFYILLCLLITYGHRDPGAFQMTTNIEHIFYTGKF
EKVDSIPKFWDWSQNVFSDGLFNDYWYNGEMTRRKGFLADGTSYLLGKAR
LRQIRVKEERCITHGMFGLNETNCGGHYDEDIEASSFIFNNGSNNGSSQN
GYQQFWNHNENDGDFSSVYDVSGRIATYPGSGFSVDLGKSKRETDKILEY
LQTNQWLDEFTRAVLIDFTVYNTQSNFYCIVLFLMEVPANGGAFVYKRIL
SVRLDRYSTDFAVFLAVCEFSFLFLTIYYVVREIKKLRIMRMQYFKHWEN
WVEIISFGLILTSFCLLMIRLGIVSEIKSSYFNAPDRFINFDPAALSDQF
YGVTLACLSFILFIKFLKLLRFNQKISLMFRTVACASEDTKNFSISFLVI
TSAFSQFAYLSFMAVLADYSTILYTIKSLFNMMLGGGSFEKLTDASPIKG
KIFFLAYFSFMAFILLNMFISIINDAFAIVQEALHQKRNSYELIDFLTQR
IKSFLPYSLTRRKSKPAQRDEKTVEIPSPESEAKEVGVNAAIEAFIKGKL
LKETPDLEASKNAKSVTIAGAVEATCEDQSSKEKPSPETDGKPFKVEHRR
SSESRRRDRSTRKRFLHCKERIDRLEATLQSLDCAVDRLVERVETECREE
EAEERVWRSILVLAYSKYSNHDSLRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029485XLOC_029485Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046158TCONS_00046158Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003915PKD_2
IPR013122PKD1_2_channel
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 872..892
NoneNo IPR availableGENE3D1.20.120.350coord: 696..912
e-value: 6.4E-5
score: 21.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 824..860
IPR003915Polycystic kidney disease type 2 proteinPRINTSPR01433POLYCYSTIN2coord: 871..889
score: 30.53
coord: 642..663
score: 42.73
coord: 518..540
score: 53.91
coord: 463..485
score: 46.09
coord: 275..296
score: 23.64
coord: 703..724
score: 58.18
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 299..728
e-value: 5.7E-84
score: 282.2

Blast
[Close]
BLAST of TCONS_00046158-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 278.87 bits (712), Expect = 4.804e-78
Identity = 209/775 (26.97%), Postives = 345/775 (44.52%), Query Frame = 0 
Query:   18 EQQLNRRIPKVRFISASHVDLRSEMTFEQVSRDYIMRKARFAHS---DMSLSSQEME-AGTVVFQNPVSSQDIHLEEQTLEDCESTSLIDAEKISASKLQGLDGVTYLPRCVKYIAWALCFSVIVVAGFFTLLYGLSFGKNDQEKWLFAFFVSVFADICINQPIKVLLLASVLTLIFRELNDELILTEIHNYRNIDFGDDRNSFHKLSQSAETPDAQPKRPEPPSKEYIEEMRRQRLYEQKMINIVIEIFTYTFYILLCLLITYGHRDPGAFQMTTNIEHIFYTGKFEKVDSIPKFWDWSQNVFSDGLFNDYWYNGEMTRRKGFLADGTSYLLGKARLRQIRVKEERCITHGMFGLNETNCGGHYDEDIEASSFIFNNGSNNGSSQNGYQQFWNHNENDGDFSSVYDVSGRIATYPGSGFSVDLGKSKRETDKILEYLQTNQWLDEFTRAVLIDFTVYNTQSNFYCIVLFLMEVPANGGAFVYKRILSVRLDRYSTDFAVFLAVCEFSFLFLTIYYVVREIKKLRIMRMQYF-KHWENWVEIISFGLILTSFCLLMI---RLGIVSEIKSSYFNAPDRFINFDPAALSDQFYGVTLACLSFILFIKFLKLLRFNQKISLMFRTVACASEDTKNFSISFLVITSAFSQFAYLSFMAVLADYSTILYTIKSLFNMMLGGGSFEKLTDASPIKGKIFFLAYFSFMAFILLNMFISIINDAFAIVQEALHQKRNSYELIDFLTQRIKSFL---------------PYSLTR-RKSKPAQ 768
            E+   R  P    + +S +  +S+    + +R    + + +       +    QE+   G   F  P S      + QTL+              AS LQ       LP     + W L  +   VA FFT+LYGL +G+    +WL +  VS    + + QP+KVL  A+   L+ + ++DE     +        G D  +  +  +++     QP     P    IE+M+   L EQK   ++ EI  Y  ++ + LL+ YG RDP A+ +  +++H F  G F  V    +F+ W+       L+             GF+ DG S L+G A++RQ+RV+E  C            C   Y  D E    + + G    ++     Q+ + ++  G     Y + G++  Y G G+ V LG  +++  KIL YL  N WLD  TRAV ++ TVYN   N +CIV   +E  A G  F +  + S+RL  ++  +  F+   E  +    +YY+V + K++      YF   W     ++   +IL S+  L +   R  +         N  +  I+F   A +D   G  +A L  +  +K   LLR N K++++   +  A  D   F I  L +  A+S  + L F   L  Y T+    +++ ++ LG  ++E++ D SP+ G     +   FM F++LN+FIS+I  AF+  Q+  +Q     E++D L  +I SFL               P SL++ R S+PAQ
Sbjct: 1710 EEAKKREDPVTLTLGSSEMKEKSQCPKPKAARSGPWKDSAYRQCLYLQLEHVEQELRLVGPRGFSQPHSHAQALRQLQTLKGGLGVQPGTWAPAHASALQVSKPPQGLPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLKRVDDEE--DTVAPLPGHLLGPDPYALFRARRNSSRDVYQP-----PLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLNRHLQHSFTRG-FSGVLGFREFFKWANTTLVSNLYG---------HPPGFITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAED---MADYGEGWNATTLSEWQYQSQDQRQG-----YPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKW----NLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQK-YYQLSEEGEIVDLLLMKILSFLGIKSKREEPGSSREQPGSLSQTRHSRPAQ 2454
The following BLAST results are available for this feature:
BLAST of TCONS_00046158-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L24.804e-7826.97Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
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