TCONS_00046271-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046271-protein
Unique NameTCONS_00046271-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046271-protein ID=TCONS_00046271-protein|Name=TCONS_00046271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
MAAQITVTGEDSDLLRITPLGAGQEVGRSCIFLEFKGKKILLDLGIHPAY
TGLDSLPFIDEIDPKEVDLLLISHFHLDHCGGLPWFLEKTHFKGRVFMTH
PTKAIYRWLLADYIKVSNLSADQMLYTEKDLDKSMDKIETIHFHQEKEVG
GIKFWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLMSAEIPSIS
PDVLICEATYGTHVHERRDQREKRFTSSVHNIINRGGRCLIPVFALGRAQ
ELLLILDEYWTQHPELQDVPVYYASSLAKKCMAVYQTFIGAMNERIRRQI
SISNPFVFKHISNLKGIDSFDDIGPSVVMASPGMMQSGLSRELFETWCTD
PRNGVIIAGYCVEGTLAKDLMSEPEEVTAINGQRMKRNMSINYISFSAHV
DYEQVSDFINILRPPHIVLNHGEANEMGRLKAALLRDFEDRGITNMQVYN
PKNCQSVKLHFRGEKMAKVIGSLASGKPSHGKPVSGVLLKRGFNYHVMAP
SDLPNYTELAISSIKQRQIIDYHASFSQLTTALKNFSGKVETFLHQGKPA
IRLFDGIISIFQERNAVVLEWASNPTNDMFADAVVVIVLEVENHPSQVKS
LNNTNLNYQQHLLKLLNSKYGEKNVIESEQGDIVTVDVDGTLAIIDLETL
SVDCTDEHLRNLVSAVVNNLNMAMTPLTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029549XLOC_029549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046271TCONS_00046271Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021718CPSF73-100_C
IPR001279Metallo-B-lactamas
IPR022712Beta_Casp
IPR011108RMMBL
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021718Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-termSMARTSM01098CPSF73_100_C_2coord: 480..677
e-value: 7.9E-33
score: 125.1
IPR021718Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-termPFAMPF11718CPSF73-100_Ccoord: 484..676
e-value: 1.0E-44
score: 152.6
IPR001279Metallo-beta-lactamaseSMARTSM00849Lactamase_B_5acoord: 27..213
e-value: 1.3E-15
score: 67.8
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 33..196
e-value: 2.4E-23
score: 82.5
IPR001279Metallo-beta-lactamaseGENE3D3.60.15.10coord: 6..285
e-value: 1.2E-71
score: 240.3
coord: 370..462
e-value: 3.7E-8
score: 32.1
IPR001279Metallo-beta-lactamaseSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 12..462
IPR022712Beta-Casp domainSMARTSM01027Beta_Casp_2coord: 249..370
e-value: 4.9E-47
score: 172.3
IPR022712Beta-Casp domainPFAMPF10996Beta-Caspcoord: 249..370
e-value: 2.2E-32
score: 111.3
IPR011108Zn-dependent metallo-hydrolase, RNA specificity domainPFAMPF07521RMMBLcoord: 385..439
e-value: 4.9E-17
score: 61.5

Blast
[Close]
BLAST of TCONS_00046271-protein vs. Swiss-Prot (Human)
Match: CPSF3 (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 927.932 bits (2397), Expect = 0.000e+0
Identity = 431/683 (63.10%), Postives = 543/683 (79.50%), Query Frame = 0 
Query:    6 TVTGEDSDLLRITPLGAGQEVGRSCIFLEFKGKKILLDLGIHPAYTGLDSLPFIDEIDPKEVDLLLISHFHLDHCGGLPWFLEKTHFKGRVFMTHPTKAIYRWLLADYIKVSNLSADQMLYTEKDLDKSMDKIETIHFHQEKEVGGIKFWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLMSAEIPSISPDVLICEATYGTHVHERRDQREKRFTSSVHNIINRGGRCLIPVFALGRAQELLLILDEYWTQHPELQDVPVYYASSLAKKCMAVYQTFIGAMNERIRRQISISNPFVFKHISNLKGIDSFDDIGPSVVMASPGMMQSGLSRELFETWCTDPRNGVIIAGYCVEGTLAKDLMSEPEEVTAINGQRMKRNMSINYISFSAHVDYEQVSDFINILRPPHIVLNHGEANEMGRLKAALLRDFEDRGITNMQVYNPKNCQSVKLHFRGEKMAKVIGSLASGKPSHGKPVSGVLLKRGFNYHVMAPSDLPNYTELAISSIKQRQIIDYHASFSQLTTALKNFSGKVETFLHQGKPAIRLFDGIISIFQERNAVVLEWASNPTNDMFADAVVVIVLEVENHPSQVK-SLNNTNLNYQQHLLK-----LLNSKYGEKNVIESEQGDIVTVDVDGTLAIIDLETLSVDCT-----DEHLRNLVSAVVNNLNMAMTPL 677
             +  E+SD L I PLGAGQEVGRSCI LEFKG+KI+LD GIHP   G+D+LP+ID IDP E+DLLLISHFHLDHCG LPWFL+KT FKGR FMTH TKAIYRWLL+DY+KVSN+SAD MLYTE DL++SMDKIETI+FH+ KEV GIKFW Y+AGHVLGAAMFMIEIAGV +LYTGDFSRQEDRHLM+AEIP+I PD+LI E+TYGTH+HE+R++RE RF ++VH+I+NRGGR LIPVFALGRAQELLLILDEYW  HPEL D+P+YYASSLAKKCMAVYQT++ AMN++IR+QI+I+NPFVFKHISNLK +D FDDIGPSVVMASPGMMQSGLSRELFE+WCTD RNGVIIAGYCVEGTLAK +MSEPEE+T ++GQ++   MS++YISFSAH DY+Q S+FI  L+PPH++L HGE NEM RLKAAL+R++ED    +++V+NP+N ++V L+FRGEK+AKV+G LA  KP  G+ VSG+L+KR FNYH+++P DL NYT+LA+S++KQ Q I Y   F+ L   L+  +G VE    Q KPA+++F   I++ QE   VVLEW +NP+NDM+AD V  ++LEV+++P   K ++   +   + H+       +L   +GE + +  +   I++V VDG  A ++LET +V+C      DE LR +V      L  A+TP+
Sbjct:    3 AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPALKVFKN-ITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGE-DCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
The following BLAST results are available for this feature:
BLAST of TCONS_00046271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF30.000e+063.10Cleavage and polyadenylation specificity factor su... [more]
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