TCONS_00046272-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046272-protein
Unique NameTCONS_00046272-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046272-protein ID=TCONS_00046272-protein|Name=TCONS_00046272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MVRLTSLILIITGIFTQVKSTSLKACQEDHYLSKNNVCIRCTICSRSQQM
IHTCADLSDTICMCPLGMYHDMRKVACMQCSTCGVGEVMHERCLNSKDTK
CQRCPNGFTSAGNNSLSCTSIHSSKSAQTIPMLWSFIFTIPLAIFLVWR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029550XLOC_029550Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046272TCONS_00046272Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001368TNFR/NGFR_Cys_rich_reg
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001368TNFR/NGFR cysteine-rich regionSMARTSM00208TNFR_3coord: 26..62
e-value: 1.0E-4
score: 31.7
coord: 64..101
e-value: 1.0
score: 18.3
IPR001368TNFR/NGFR cysteine-rich regionPFAMPF00020TNFR_c6coord: 26..62
e-value: 2.5E-6
score: 27.7
coord: 64..101
e-value: 5.9E-7
score: 29.7
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS00652TNFR_NGFR_1coord: 26..62
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 25..62
score: 9.851
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 63..101
score: 9.038
NoneNo IPR availableGENE3D2.10.50.10coord: 11..48
e-value: 1.2E-6
score: 28.1
coord: 73..131
e-value: 1.8E-8
score: 34.0
NoneNo IPR availableGENE3D2.10.50.10coord: 49..72
e-value: 1.1E-6
score: 28.1
NoneNo IPR availableSUPERFAMILY57586TNF receptor-likecoord: 40..99

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046272-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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