TCONS_00046353-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046353-protein
Unique NameTCONS_00046353-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046353-protein ID=TCONS_00046353-protein|Name=TCONS_00046353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp
MNSPALYHRNNSMNGTLTKDHTNALKKFLLDMRNKNFDDIKLATYRTAAK
VFFIQKTSKIYLVDIYNIIEAFRENGLNTLDSKDEIDEPRLECIIASIYY
SLYKRLPATQDIDVEKSILILTQWIMHAYDSDGVGRIRVLSVKTALSTLC
EGRMVDKFRYIFTQISESNGVLNMAKLDHYLRDLLTLPSAVGEEPNFGYS
DAILDSFFHPNGPLDRNTTKLDEFLDVFLSEKSNGILFWLHMLNKISKAS
QAEHETQCKGCGIKNFSGLRYKCMECYSYNMCQDCYWRDRITGTHKVEHT
SREFSTWNKNDRGTSVRKKLLCAPTKSQHQRLPNYPKEPELNKTLDMSNI
VPPLPSEPNSPMSTLQRTPRTPRMMNGSNSQYSTLQRGMSGGQQSQFSTL
QRNRKTSDGQYSGPPSPMSNMPRNDDEHALIVMYAQKLATARNEQEANLR
NKKLSTSSEPSNQQKEILTNLEEKNRSLLNEIRKLKQEHEEAVKNAQQMG
CDPNLLTELRVLRQRKDELEMRMSALQETRRELMVQLEGLMKLLKNHEIS
TTPRQMRRTGGGDNPRDTNDFRSPKTSGTSTLMRGVNGDVKEAFGKTSTI
KENQDLRVDLMSAVDDVTSAMATVVTELANNRGSSSSTMEPHNEENDNVG
ERDERMSWSINGQTNRNSNSVVTSSNTQVSVY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029594XLOC_029594Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046353TCONS_00046353Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ
IPR015153EF-hand_dom_typ1
IPR015154EF-hand_dom_typ2
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 461..502
NoneNo IPR availableCOILSCoilCoilcoord: 509..543
NoneNo IPR availableGENE3D1.10.238.10coord: 60..152
e-value: 3.8E-25
score: 87.6
NoneNo IPR availableGENE3D1.20.5.340coord: 433..632
e-value: 1.5E-5
score: 24.2
NoneNo IPR availableGENE3D1.10.238.10coord: 154..233
e-value: 1.3E-14
score: 53.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 551..584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 629..682
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..464
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 237..307
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 252..297
e-value: 9.4E-7
score: 38.4
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 253..296
e-value: 6.3E-8
score: 32.2
IPR000433Zinc finger, ZZ-typePROSITEPS01357ZF_ZZ_1coord: 258..285
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 252..299
score: 13.029
IPR015153EF-hand domain, type 1PFAMPF09068EF-hand_2coord: 32..150
e-value: 2.1E-27
score: 95.6
IPR015154EF-hand domain, type 2PFAMPF09069EF-hand_3coord: 154..246
e-value: 8.0E-16
score: 58.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 35..152
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 154..249

Blast
[Close]
BLAST of TCONS_00046353-protein vs. Swiss-Prot (Human)
Match: DTNB (Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 5.503e-143
Identity = 249/634 (39.27%), Postives = 370/634 (58.36%), Query Frame = 0 
Query:   26 KKFLLDMRNKNFDDIKLATYRTAAKVFFIQKTSKIYLVDIYNIIEAFRENGLNTLDSKDEIDEPRLECIIASIYYSLYKRLPATQDIDVEKSILILTQWIMHAYDSDGVGRIRVLSVKTALSTLCEGRMVDKFRYIFTQISESNGVLNMAKLDHYLRDLLTLPSAVGEEPNFGYSDAILDSFFHPNGPLDRNTTKLDEFLDVFLSEKSNGILFWLHMLNKISKASQAEHETQCKGCGIKNFSGLRYKCMECYSYNMCQDCYWRDRITGTHKVEHTSREFSTWNKNDRGTS--VRKKLLCAPTKSQHQRLPNYPKEPELNKTLDMSNIVPPLP-------------SEPNSPMSTLQRTPRTPRMMNGSNSQYSTLQRGMSGGQQSQFSTLQRNRKTSDGQYSGPPSPMSNMPRNDDEHALIVMYAQKLATARNEQEANLRNKK--LSTSSEPSNQQKEILTNLEEKNRSLLNEIRKLKQEHEEAVK----NAQQMGCDPNLLTELRVLRQRKDELEMRMSALQETRRELMVQLEGLMKLLKNHE-----ISTTPRQMRRTGGGDNP-----RDTNDFRSPKTSGTSTLMRGVNGDVKEAFGKTSTIKENQDLRVDLMSAVDDVTSAMATVVTEL 628
            ++  ++MR +NFD I+L+TYRTA K+ F+QK   ++LVDI+N+IEAFR+NGLNTLD   EI   RLE +I+SIYY L KRLP+T  I VE+SI +L  +++ AYDS+G G++ V SVK  L+T+C G+M+DK RY+F+Q+S+SNG++  +K D +L+++L LP+AV E P+FGY++  + + F    P  R    L+ FLD  +++     L WL ++++++      H  +C  C  ++  G RY+C +C++Y +CQ+C+WR    G H  +H  +E S+W    +  S  + K L C PT+      P +P++PE  K LD+++IVPP P             S   +P   LQ +   P  +   ++  +           S  + LQ   +  D      PS      R D+EH LI  YA +LA     +  N+      LS + + + QQ++++  LE KNR +L EI++L+ EHE+A +     AQQ   +P LL ELR+LRQRKDELE RMSALQE+RRELMVQLE LMKLLK  E      +T       T GG  P     R T+   +P      +L  GV GDV+EAF + +     ++LR DL+ A D +T+ M+++V EL
Sbjct:   16 RQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDNGLNTLDHTTEISVSRLETVISSIYYQLNKRLPSTHQISVEQSISLLLNFMIAAYDSEGRGKLTVFSVKAMLATMCGGKMLDKLRYVFSQMSDSNGLMIFSKFDQFLKEVLKLPTAVFEGPSFGYTEHSVRTCF----PQQRKIM-LNMFLDTMMADPPPQCLVWLPLMHRLAHVENVFHPVECSYCRCESMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQMKEHSSWKSPAKKLSHAISKSLGCVPTREPPH--PVFPEQPE--KPLDLAHIVPPRPLTNMNDTMVSHMSSGVPTPTKRLQYSQDIPSHLADEHALIA-----------SYVARLQHCARVLDS-----PS------RLDEEHRLIARYAARLAA----EAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQ---NPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEELMKLLKEEEQKQAAQATGSPHTSPTHGGGRPMPMPVRSTSAGSTPTHCPQDSL-SGVGGDVQEAFAQGT----RRNLRNDLLVAADSITNTMSSLVKEL 606
The following BLAST results are available for this feature:
BLAST of TCONS_00046353-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTNB5.503e-14339.27Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=... [more]
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