TCONS_00046582-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046582-protein
Unique NameTCONS_00046582-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046582-protein ID=TCONS_00046582-protein|Name=TCONS_00046582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MFWEGALVLLLINHAVAQGGPFDTNADGGIRPWMKTDIDNKKGPKVPEDH
VIANLNEKKKITFECPIAIEDASTVFATWYRLTKSGAMSDLMYEEGKYDF
LTFTSFTIENLNSKDEGTYICREGDQYGPIIKKFSLIIMEALETTETPGN
GPPVWLYVPKRIVRANSKQLFIARCAVAEPEGVKITVYRLRDDKEILKQF
KDPAVVLHRPDVDDAGYYKCVAENSQGRIEYQFEVTIRVNGRYGKWEAWG
PCDKECGLGFKTRNRQCDSPAPSGGGRDCTGESSQRLSCRSRSCQKPFLK
KFGFEITKEGLHLSCKASGIPTPSVQWYFNGRRFPMSYDAQNPEFKIPKP
KARSGSYSCRIRNHVGFMTMYITIKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029730XLOC_029730Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046582TCONS_00046582Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR000884TSP1_rpt
IPR013783Ig-like_fold
IPR007110Ig-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 56..128
e-value: 1.1
score: 6.8
coord: 166..227
e-value: 0.11
score: 16.4
coord: 306..366
e-value: 0.1
score: 16.6
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 50..139
e-value: 0.17
score: 20.9
coord: 300..375
e-value: 47.0
score: 5.6
coord: 160..240
e-value: 2.4
score: 16.8
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 243..295
e-value: 1.7E-7
score: 40.9
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 245..294
e-value: 7.7E-8
score: 32.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 243..288
e-value: 2.7E-12
score: 46.3
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 240..295
score: 11.858
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 239..289
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 47..147
e-value: 1.6E-7
score: 30.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 160..242
e-value: 5.2E-7
score: 28.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 289..376
e-value: 4.9E-12
score: 45.3
NoneNo IPR availablePFAMPF13927Ig_3coord: 309..363
e-value: 8.4E-8
score: 32.6
NoneNo IPR availableCDDcd00096Igcoord: 313..373
e-value: 1.55338E-6
score: 44.4023
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 44..122
score: 8.52
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 297..375
score: 9.228
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 152..236
score: 6.905
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 309..376
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 152..237
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 44..139

Blast
[Close]
BLAST of TCONS_00046582-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.440e-16
Identity = 46/195 (23.59%), Postives = 84/195 (43.08%), Query Frame = 0 
Query:  105 SFTIENLNSKDEGTYICREGDQYGPIIKKFSLIIMEALETTETPGNGPPVWLYVPKRIVRANSKQLFIARCAVAEPEGVKITVYRLRDDKEI-----LKQFKDPAVVLHRPDVDDAGYYKCVAENSQGRIEYQFEVTIRVNGRYGKWEAWGPCDKECGLGFKTRNRQCDSPAPSGGGRDCTGESSQRLSCRSRSC 294
            S  I    ++D G Y C   ++ G + +  SL +             PP+    P   V     ++ +   A  EP+    T+   R    I     +    + ++ +     +D   ++CVA N  G +  +  V ++V+G + +W AW  C   CG G + R+R C+ P P+ GG+ C G   +  +C+++ C
Sbjct: 4403 SLAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQS-----------PPIITLEPVETVINAGGKIILNCQATGEPQP---TITWSRQGHSISWDDRVNVLSNNSLYIADAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPC 4583
The following BLAST results are available for this feature:
BLAST of TCONS_00046582-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN17.440e-1623.59Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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