TCONS_00046665-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046665-protein
Unique Name	TCONS_00046665-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	519

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046665-protein ID=TCONS_00046665-protein|Name=TCONS_00046665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MAMNFFRKRSKPDGVGNDWKATGSFVRKPVKGWLHSDRLLESSGVTYEAK
YIGAVKIIESMRNVPFEHRGAVVREAISRCCLQSKLFNFKPSKISVTHGV
VGDVDLQNCGDKSMITFSKTTVKAFVLESGVQLFQHPMESISFASLGEGQ
YENLVAYVAKDSRLERGCFIFECAPGLANDLILTIGQAFELKYKDFLNKN
PVIQPVVARFGDPSSALNAQVQNRYEDTTPKEHTYSNHHDFEGATAPEMD
YDHLANNNKRLETQEEQYNTLSMNXNGLISPKHGPSIAPGATFMGPDQSV
ATVFDNPISKMNAKKTAMNGHTSFDMEDGKRKANKPENIKIDNSSTADES
MNTRHETMYLVPSPSQKIKQKETPLPPSSQPNTPSQPTPPTPTAPPRPNM
KQRLKISEKLQIQSWFHGVLSRDSAEGMIHIDGEFLVRESGGSKGQYVLT
GMRNGTHRHLLLVDPEGKVRTRDHSFDTVVGLIAYHMTHNIPICSGSSEV
YLIHEIHDLRRDPSQSFAI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029782	XLOC_029782	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046665	TCONS_00046665	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006019	PID_Shc-like
IPR000980	SH2
IPR006020	PTB/PI_dom
IPR011993	PH_dom-like

Vocabulary: **Biological Process**
Term	Definition
GO:0035556	intracellular signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035556	intracellular signal transduction
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 251..274
IPR006019	Phosphotyrosine interaction domain, Shc-like	PRINTS	PR00629	SHCPIDOMAIN	coord: 132..160 score: 50.25 coord: 42..57 score: 40.18 coord: 167..193 score: 59.79 coord: 60..82 score: 52.17
IPR000980	SH2 domain	PRINTS	PR00401	SH2DOMAIN	coord: 475..489 score: 24.2 coord: 444..455 score: 29.37 coord: 432..442 score: 58.36 coord: 415..429 score: 37.16
IPR000980	SH2 domain	SMART	SM00252	SH2_5	coord: 413..492 e-value: 1.4E-18 score: 77.7
IPR000980	SH2 domain	PFAM	PF00017	SH2	coord: 415..486 e-value: 5.6E-12 score: 45.5
IPR000980	SH2 domain	GENE3D	3.30.505.10		coord: 398..512 e-value: 4.2E-21 score: 74.3
IPR000980	SH2 domain	PROSITE	PS50001	SH2	coord: 415..506 score: 14.586
IPR000980	SH2 domain	SUPERFAMILY	55550	SH2 domain	coord: 393..506
IPR006020	PTB/PI domain	SMART	SM00462	PTB_9	coord: 42..202 e-value: 5.8E-19 score: 79.0
IPR006020	PTB/PI domain	PFAM	PF00640	PID	coord: 47..198 e-value: 2.6E-22 score: 79.3
IPR006020	PTB/PI domain	PROSITE	PS01179	PID	coord: 44..201 score: 25.25
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 13..198 e-value: 1.6E-25 score: 89.2
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 19..197

Blast

[Close]

BLAST of TCONS_00046665-protein vs. Swiss-Prot (Human)
Match: SHC1 (SHC-transforming protein 1 OS=Homo sapiens GN=SHC1 PE=1 SV=4)

HSP 1 Score: 227.254 bits (578), Expect = 2.765e-67
Identity = 161/513 (31.38%), Postives = 237/513 (46.20%), Query Frame = 0

Query:   16 GNDWKATGSFVRKPVKGWLHSDRLLESSGVTYEAKYIGAVKIIESMRNVPFEHRGAVVREAISRCC-----LQSKLFNFKPSKISVTHGVVGDVDLQNCGDKSMITFSKTTVKAFVLESGVQLFQHPMESISFASLGEGQYENLVAYVAKDSRLERGCFIFECAPGLANDLILTIGQAFELKYKDFLNKNP-VIQPVVARFGDPSSALNAQVQNRYEDTTPKEHTYSNHHDFEGATAPEMDYDHLANNNKRLETQEEQYNTLSMNXNGLISPKHGPSIAPGATFMGPDQSVAT------------VFDNP----ISKMNAKKTAMNGHTSFDMEDGKRKANKPENIKIDNSSTADESMNTRHETMYLVPSPSQKIKQKETPLPPSSQPNTPSQPTPPTPTAPPRPNMKQRLKISEKLQIQSWFHGVLSRDSAEGMIHIDGEFLVRESGGSKGQYVLTGMRNGTHRHLLLVDPEGKVRTRDHSFDTVVGLIAYHMTHNIPICSGSSEVYLIHEI 506
            G +W   GSFV KP +GWLH +  +   GV+Y  +Y+G V++++SMR + F  R  V REAIS  C      +      KP    ++  ++G  +L+  G    +T S +++     +    +  H M+SISFAS G+      VAYVAKD   +R C I EC  GLA D+I TIGQAFEL++K +L   P ++ P     G   SA + + +         +H Y N  DF G   P      + +   R           + N     +P H  +  P    +G D  V              +FD+P    +  ++  + A+ G               P N  I+ S+  D       E    VP P Q +   E                                    +L+ + WFHG LSR  AE ++ ++G+FLVRES  + GQYVLTG+++G  +HLLLVDPEG VRT+DH F++V  LI+YHM +++PI S  SE+ L   +
Sbjct:  131 GEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSS-ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEP------PDHQYYN--DFPGKEPP---LGGVVDMRLREGAAPGAARPTAPNAQ---TPSHLGATLPVGQPVGGDPEVRKQMPPPPPCPGRELFDDPSYVNVQNLDKARQAVGGA-------------GPPNPAINGSAPRDLFDMKPFEDALRVPPPPQSVSMAE------------------------------------QLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPV 579

The following BLAST results are available for this feature:

BLAST of TCONS_00046665-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046665-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SHC1	2.765e-67	31.38	SHC-transforming protein 1 OS=Homo sapiens GN=SHC1...	[more]

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TCONS_00046665-protein (polypeptide) - C. hemisphaerica