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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00046675-protein ID=TCONS_00046675-protein|Name=TCONS_00046675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=834bp
MDAREIVLPPNTQSSAAGNAHRPWPAKHHPGPHEGQVPTPPGSLPATSKP
PMPNPPAGAVPTHTAHWNSGGHPSREGALSTSDRAADIMLLKQEASSRFQ
PYRHHHATPPAGPPTSTTGGHNVRPKKFPKFTAKDIERYLYGRQEMKIVN
IEETKEKQIACGPKENGVKSEDKNKPAKWCDLCQEIRFGECPEHGPLTAQ
RDSINLQGPKSYAISTFPDEVGLCVSTIPMSGYGVFARLFIPLGTWIGPY
EGKKISVDDGMKMVGKGEGNFLWEIHENGRLSAFLDASDEKTSSWMRFIQ
CARHKGEQNLFVFQYYGSIYYRAFKDITVGEELLAWYDDKYPQYCGIPYE
MSDFASYLTETGQIPPGDGPPKGGNPAEFDRHHPPLSEEGYPPHNPHHYH
HPRSGGSHLIQGPGSKPKTGGDKHRSEVSKHPPKHGPKEYPHALAQPPTL
SQAPHGTDSRFITSASGKAPPKQHPHMSLARFSPRPGSASFRRTEHAHNS
MLRSMSEDDLRHKPPKHHEGIRPHGARHRPHFDREHHEHHPPEHMIPHGA
PSHFMVHQGGPHGTPQPHISPVTNYSPLRPVMSITPLDRSKGSRDDLNKL
QGAGGHPEKGFYEKHSSEYILEHERMLHLHDQALHGERGPKNGRMPHYGG
QDSGSEMRHIGRKFTHKQSFDSPMVGEGVEKHPHYPPNTCTRCQITIPDP
REFHEHMMSHRERDGNPSMSERPPFWCGLCARSFSSATSLKNHMKMHDKG
HPPPGSPVPVAKNMPTGVPLPPGGSTLSSGGMPPPQGGELPPVHATKDLN
ATKPTDCMKCGKTFTKSSDFAKHLATPGECVPHT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 805..825
e-value: 74.0
score: 5.6
coord: 725..747
e-value: 0.11
score: 21.7
coord: 688..710
e-value: 4.3
score: 16.3 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 727..747 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 725..752
score: 12.321 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 805..834
score: 9.951 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 724..747
coord: 800..825 |
| IPR001214 | SET domain | SMART | SM00317 | set_7 | coord: 221..344
e-value: 3.0E-6
score: 36.7 |
| IPR001214 | SET domain | PFAM | PF00856 | SET | coord: 232..337
e-value: 7.7E-5
score: 23.0 |
| IPR001214 | SET domain | PROSITE | PS50280 | SET | coord: 221..338
score: 13.724 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 807..825
e-value: 0.0076
score: 16.6 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 812..834
e-value: 4.3E-4
score: 19.8 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 685..735
e-value: 2.8E-9
score: 36.5 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 725..745
e-value: 1.1E-4
score: 22.3 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 736..811
e-value: 3.2E-11
score: 42.9 |
| None | No IPR available | GENE3D | 2.170.270.10 | | coord: 215..349
e-value: 3.6E-18
score: 65.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 98..127 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..79 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 506..527 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 769..789 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 359..492 |
| None | No IPR available | SUPERFAMILY | 82199 | SET domain | coord: 222..348 |
Blast
BLAST of TCONS_00046675-protein vs. Swiss-Prot (Human)
Match: PRDM6 (Putative histone-lysine N-methyltransferase PRDM6 OS=Homo sapiens GN=PRDM6 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.699e-39 Identity = 85/230 (36.96%), Postives = 124/230 (53.91%), Query Frame = 0
Query: 130 KFTAKDIERYLYGRQEMKIVNIEETKEKQIACGPKENGVKSEDKNKPAKWCDLCQEIRFGECPEHGPLTAQRDSINLQGPKSYA--------ISTFPDEVGLCVSTIPMSGYGVFARLFIPLGTWIGPYEGKKISVDDGMKMVGKGEGNFLWEIH-ENGRLSAFLDASDEKTSSWMRFIQCARHKGEQNLFVFQYYGSIYYRAFKDITVGEELLAWYDDKYPQYCGIPYE 350
+ +A++++ YLYG+Q M+I+ + ++ + P CD+C + R GECP HGPL + R + + A + P EV LC ST+P YG+ A I GTWIGP++G + + ++ LWEI+ ++G L F+D + SSWMR+I+CARH GEQNL V QY +I+YRA DI G ELL WY+D Y + GIP +
Sbjct: 167 RCSAEELDYYLYGQQRMEIIPL------------------NQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLP-PEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQ 377
The following BLAST results are available for this feature:
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