TCONS_00046683-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046683-protein
Unique NameTCONS_00046683-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1134

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046683-protein ID=TCONS_00046683-protein|Name=TCONS_00046683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1134bp
MKSFSVLVLACLVYNLQTIEGGDIDMCRFKDTGDKFCSLFGGHWLEPDSN
VWQTRSMPTSPNTGPQNGADPTTISSSGDKFYLVANGLLNTQHCYSSRST
SMDPTTDTNVCVSFLYNMNGATMGSLYVIREHPISSNALPPSPKPQIVPL
NLSDGDRKEVLVATGNQGDNWIPKTMTIPLVSGKNFYRISFQVIVGNGPT
SIVALDNVKASLGACPGHSTVVVPSSSTAQPVSTSQAAVQSSSPVVQSSS
QPPVVESSSQAPVVQSSSQAPVVESSSQAPVVQSSSQAPVIQSSSQAPAV
QSSSQAPVVESSSQAAPPLSSTVEQHATSSAIAPSPSSSVSAPMSSAIPS
SGDGQWAQWSGFTTCQFQGVACGWGKQNKSRSCSDPAPAGGAQCLKVDGS
MRGMDETVESDCYVACPDNVVDGGWGSWNILTNCSKECNAGMQTVKRECN
FPSPSINGAHCQMENGSMGMVEMKDVPCNTQPCEPLDTFESWGPWSPCTK
TCGFGEMTRTRQCTGICSVTKETRECSSGCRTYKCPDPSEYQFYCDFEDN
MCITKFHSEPTKFVVGKSTPSPNTGADADATFPTGCGSFLYFDSSSFENG
VLAGPSMIAPTGQQCISFDVNMYANDMNHMGNLTVYFFQQQFGAGYKQEV
IWESSKDLTPTSKKWHKVNIDLFNIDNRNDYRILFKVQKPFGTFLSDVSI
DNYVVKEGLCPESVDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNE
GKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCD
TQGAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTA
TKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPT
HGNWNSWVEGTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLY
ESENLTCSSCCPTNATWVDVMNITSCSAECGEGNWTWEQVCTNASCNGAD
LFCDGYAPGKLRNVTKNCTTWLDPVRKSCRLHGGWKVVNETECSCASNQT
KVVTRECIDPVPQGGGNWCENIDGTGNNDTEIFTKSCVSECHINGSWSGW
VNTTICTSCGISNTTXWKLEWMGQHYNLYIVWYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029791XLOC_029791Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046683TCONS_00046683Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR000884TSP1_rpt
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000998MAM domainSMARTSM00137MAM_2coord: 540..712
e-value: 1.5E-6
score: 28.1
IPR000998MAM domainPFAMPF00629MAMcoord: 27..215
e-value: 2.4E-12
score: 46.9
coord: 545..710
e-value: 9.2E-15
score: 54.8
IPR000998MAM domainPROSITEPS50060MAM_2coord: 25..217
score: 16.855
IPR000998MAM domainPROSITEPS50060MAM_2coord: 543..712
score: 15.699
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 425..484
e-value: 5.7E-4
score: 29.2
coord: 489..531
e-value: 2.2E-5
score: 33.9
coord: 1035..1092
e-value: 10.0
score: 0.4
coord: 834..899
e-value: 6.4E-11
score: 52.3
coord: 904..962
e-value: 0.0015
score: 27.8
coord: 356..417
e-value: 1.4
score: 8.1
coord: 718..770
e-value: 3.1E-14
score: 63.3
coord: 775..829
e-value: 5.8E-11
score: 52.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 830..898
e-value: 1.7E-11
score: 43.8
coord: 488..545
e-value: 3.9E-6
score: 26.6
coord: 421..483
e-value: 1.7E-9
score: 37.4
coord: 900..960
e-value: 2.0E-6
score: 27.5
coord: 714..769
e-value: 1.8E-17
score: 62.8
coord: 771..828
e-value: 2.8E-9
score: 36.7
coord: 352..416
e-value: 0.0025
score: 17.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 776..828
e-value: 1.7E-7
score: 31.2
coord: 836..874
e-value: 7.3E-7
score: 29.2
coord: 903..934
e-value: 1.5E-5
score: 25.0
coord: 719..769
e-value: 5.2E-10
score: 39.3
coord: 492..526
e-value: 4.8E-4
score: 20.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 715..770
score: 13.704
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 772..829
score: 10.789
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 422..484
score: 8.499
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 831..899
score: 10.736
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 487..531
score: 9.988
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 901..958
score: 8.822
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 420..483
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 897..941
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 713..769
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 831..871
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 490..526
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 773..803
NoneNo IPR availableGENE3D2.60.120.200coord: 546..710
e-value: 2.0E-18
score: 66.5
NoneNo IPR availableGENE3D2.60.120.200coord: 23..217
e-value: 1.2E-15
score: 57.4
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 48..215
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 541..710

Blast
BLAST of TCONS_00046683-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.353e-46
Identity = 123/363 (33.88%), Postives = 165/363 (45.45%), Query Frame = 0
Query:  714 VDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCDTQ-----GAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSSCCPTNATWVDVMNITSCSAECGEGNWTWEQVCTN-ASCNGADLFCDGYAPGKLRNVTKNCTTWLDPVRKSCRLHGGWKVVNETECSCASNQTKVVTRECIDPVPQGGGNWC 1069
            V G +S W  W  CS TCG G+Q R R C  P P N GK C G+  E+R+C +K C   G+WS WS W+EC+ SC  G  +R R C+       G  C   +G++     + + CN+ PC   G W +W P   CS +CG  T+ R+R+C+NP P   GS+C             D  E++   C    CP HG W +W     CSV CG G + R R C++P P+  G KC  +           +   S  CPT+  W       +CS  C  G     + C N    NG      G A G   +  + C T + PV  S    G W   ++   SC   + K   R C  PVP  GG  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC---EGNA----VEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC-------------DGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD-------VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNG------GRACGGPDSQIQRCNTDMCPVDGSW---GSWHSWSQCSASCGGGE-KTRKRLCDHPVPVKGGRPC 4853          

HSP 2 Score: 176.407 bits (446), Expect = 2.441e-44
Identity = 105/289 (36.33%), Postives = 141/289 (48.79%), Query Frame = 0
Query:  710 CPESVDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCDTQ-----GAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSS-CCPTNATWVDVMNITSCSAECGEGNWTWEQVC 991
            CP  VDG WS W  W +C+ +CG G QTR R+C  P  ++ G+ C GN  E+  CN + C   G WSAW PW  CS SC  GT +R R+C+       G+ C   DG+    E Q   CN   C   G W +W    ACS +CG   + R+R C +P P+  G  C+               + +   C    CPTHGNW+ W   GTCS  C  G   RYR C+NP P N G  C           +S+   C++  CP + +W    + + CSA CG G  T +++C
Sbjct: 4583 CP--VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC---DGA----ETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-------------DVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGP--------DSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841          

HSP 3 Score: 124.02 bits (310), Expect = 2.393e-28
Identity = 109/374 (29.14%), Postives = 156/374 (41.71%), Query Frame = 0
Query:  770 QAFGTWSAWSPWQECSVSCNNGTTSRERVCD-----TQGAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSSCCPTNATWVDVMNITSCSAECGEGNWTWEQVCTN-------ASCNGADL---FCDGYAPGKLRNVTKNCTTWLDPVRKSCRLHG------GWKVVNETECSCASNQTKVVTRECIDPVPQGGGNWCENIDGTGNNDTEIFTKSCVSE-CHINGSWSGWVNTTICT-SCGISNTTXWKL 1119
            Q  G +S WS W+ CSV+C  G   R R+C+       G  C    GS    + +  +C  +PC  DG W  W   + C+ +CG   + R+R C+NP  +  G  C+      N + +          C +  CP HG W++W   GTCS  CG GT+ R R CNNP P   G  C  A    Q   E         CP +  W    + ++CS  CG G     + C++         C G+D+   FC+                  DP    C  HG      GW   + T   C   Q +   R C +P P  GG  C      G  D++I  + C ++ C ++GSW  W + + C+ SCG    T  +L
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPC---QGS----DLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE-----GNAVEI--------IMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERN-------CPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-----------------DP----CPTHGNWSPWSGWGTCSRT---CNGGQMRRY-RTCDNPPPSNGGRAC------GGPDSQI--QRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRL 4840          

HSP 4 Score: 91.2781 bits (225), Expect = 2.534e-18
Identity = 57/161 (35.40%), Postives = 74/161 (45.96%), Query Frame = 0
Query:  354 GQWAQWSGFTTCQFQGVACGWGKQNKSRSCSDPAPA-GGAQCLKVDGSMRGMDETVESDCYVACPDNVVDGGWGSWNILTNCSKECNAGMQTVKRECNFPSPSINGAHCQMENGSMGMVEMKDVPCNTQPCEPLDTFESWGPWSPCTKTCGFGEMTRTRQC 513
            G ++QWS +  C    V CG G Q +SR C+ P PA GG  C   D  MR             CP   VDG W  W++   C++ C  G QT  R CN PS    G  C+     + M       CN +PC     + +W PW  C+++CG G  TR R C
Sbjct: 4530 GGFSQWSAWRACS---VTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-------PCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC 4670          

HSP 5 Score: 87.8113 bits (216), Expect = 3.076e-17
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  710 CPESVDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCD 800
            CP    G WS W  WG CS TC  G   R R+C  P P N G+ C G  ++++ CN   C   G+W +W  W +CS SC  G  +R+R+CD
Sbjct: 4754 CP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCD 4842          
The following BLAST results are available for this feature:
BLAST of TCONS_00046683-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.353e-4633.88Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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