TCONS_00046691-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046691-protein
Unique NameTCONS_00046691-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046691-protein ID=TCONS_00046691-protein|Name=TCONS_00046691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
KCLVFLSEEYSICYLFCFSFSWRKPKIYRAVIEDVIKNVRESFLNEGVDE
AILNELKQLWENKLQQSRAIDVIPSDVNVRVSLTYPHSSQTAASSTQSSL
PTTVQPAPKPAARPQATAVAPTTTPTQTVFRNAAGQQQQVVYVSNHPTLG
HVGPMTGAAVQATMALQNAAAAAGRGQPQAIIRQPIMGMPGQVIVQAQPG
APNIYQHFQGHVAAVGQRVIYAPATATPATVAAAAAQPAQIQAAQQQQAA
AVAAAQRTQQVAAAQRTQQIAAAQRAQQAAAAAAAAGQKPPNRNIVQVDG
ANDEQETCCSPTTSTSTKPRQQPRCRKPSKEIILQFDGPNDSDSEDEEEE
EEEDFDNVDIPVAAGGISGGGVDIDEPGEEEEPLNSEDDVTDDEEQADLF
DTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029793XLOC_029793Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046691TCONS_00046691Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004855TFIIA_asu/bsu
IPR009088TFIIA_b-brl
IPR009083TFIIA_a-hlx
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004855Transcription factor IIA, alpha/beta subunitSMARTSM01371TFIIA_2coord: 26..447
e-value: 1.5E-93
score: 326.8
IPR004855Transcription factor IIA, alpha/beta subunitPFAMPF03153TFIIAcoord: 27..447
e-value: 4.4E-75
score: 254.1
IPR004855Transcription factor IIA, alpha/beta subunitCDDcd07976TFIIA_alpha_beta_likecoord: 25..71
e-value: 1.6871E-21
score: 87.9651
IPR004855Transcription factor IIA, alpha/beta subunitCDDcd07976TFIIA_alpha_beta_likecoord: 402..447
e-value: 9.16852E-29
score: 107.61
NoneNo IPR availableGENE3D1.10.287.100coord: 24..70
e-value: 2.3E-22
score: 77.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..395
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 388..447
e-value: 1.6E-26
score: 91.2
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 392..447
IPR009083Transcription factor IIA, helicalSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 24..64

Blast
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BLAST of TCONS_00046691-protein vs. Swiss-Prot (Human)
Match: TF2AA (Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.889e-32
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:  332 IILQFDGPNDSDSEDEEEEEEEDFDNVDIPVAAGGISGGGVDIDEPGEEEEPLNSEDDVTDDEEQADLFDTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW 447
            ++LQ DG  D+ SE++E+EEE+  D+ +      G   G V       EEEPLNSEDDV+D+E Q +LFDT+NVVVCQYDKI R++N+WKFHLKDGIMNLN +D++F KA GDAEW
Sbjct:  269 LVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQV-------EEEPLNSEDDVSDEEGQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
The following BLAST results are available for this feature:
BLAST of TCONS_00046691-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2AA9.889e-3257.76Transcription initiation factor IIA subunit 1 OS=H... [more]
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