TCONS_00046916-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046916-protein
Unique NameTCONS_00046916-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046916-protein ID=TCONS_00046916-protein|Name=TCONS_00046916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MRLLNFMQGRKRYVWMLLSKAFKSLTLGCRVEAIKSEVSIVSRLLSTTAS
HQGRTQWSYTRPRDTHMELYVPKRLRDGKFYRNRGKSGRGEDGRIKIRHK
GGGAQRNWRIVDMVRVPLLEENEPVKTITDRVLAIGYDPFRTANIAMVAG
DGSNQTKLILCPHEMKVGDVITASRDKPISLARMIPGDAYPLQHLPISTM
VHNIEREPGLGGHFCRAGGMYGTIIRKMDGNVVLKCPGKNRPQITVNAKC
LATIGRASNINQKHEVIGKAGRSRWLNRKPKGQTGKDRWHHRKKVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029932XLOC_029932Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046916TCONS_00046916Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR022669Ribosomal_L2_C
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR014722Rib_L2_dom2
IPR014726Ribosomal_L2_dom3
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 88..173
e-value: 2.5E-23
score: 93.5
IPR002171Ribosomal protein L2PIRSFPIRSF002158RPL2p_RPL2a_RPL8e_RPL2ocoord: 60..283
e-value: 5.1E-42
score: 142.0
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 184..292
e-value: 1.6E-17
score: 74.2
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 186..281
e-value: 9.1E-24
score: 84.0
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 88..172
e-value: 3.9E-18
score: 65.1
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 181..257
e-value: 1.8E-18
score: 65.7
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10coord: 259..287
e-value: 0.0016
score: 18.0
NoneNo IPR availableGENE3D2.40.50.140coord: 78..169
e-value: 3.0E-19
score: 68.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..296
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 66..179
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 186..281

Blast
[Close]
BLAST of TCONS_00046916-protein vs. Swiss-Prot (Human)
Match: RM02 (39S ribosomal protein L2, mitochondrial OS=Homo sapiens GN=MRPL2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.803e-40
Identity = 76/209 (36.36%), Postives = 119/209 (56.94%), Query Frame = 0 
Query:   84 RGKSGRGEDGRIKIRHKGGGAQRNWRIVDMVRVPLLEENEPVKTITDRVLAIGYDPFRTANIAMVAGDGSNQTKLILCPHEMKVGDVITASRDKPISLARMIPGDAYPLQHLPISTMVHNIEREPGLGGHFCRAGGMYGTIIRKMDGNVVLKCPGKNRPQITVNAKCLATIGRASNINQKHEVIGKAGRSRWLNRKPKGQTGKDRWHHR 292
            R   GR   GRI++   GGG ++ +R++D +R     E        ++V+ + YDP R+A+IA+VAG   ++ + I+    M+ GD I  S            GDA+PL  LP+ T+++N+E EPG G  + RA G  G ++RK++G  +++ P K   Q+ V   C+AT+GR SN++    VIGKAGR+RWL ++P       RWH +
Sbjct:   80 RKSGGRDHTGRIRVHGIGGGHKQRYRMIDFLR--FRPEETKSGPFEEKVIQVRYDPCRSADIALVAG--GSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKR--QMQVLETCVATVGRVSNVDHNKRVIGKAGRNRWLGKRPN----SGRWHRK 278
The following BLAST results are available for this feature:
BLAST of TCONS_00046916-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM021.803e-4036.3639S ribosomal protein L2, mitochondrial OS=Homo sa... [more]
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