TCONS_00047008-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047008-protein
Unique NameTCONS_00047008-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047008-protein ID=TCONS_00047008-protein|Name=TCONS_00047008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MTSKITREALYECVTAIRTGSTDKKRKFTETVELQIGLKNYDPQKDKRFS
GTVKLKNIPRPKLNICVLGDESHCDQAKASGLPWMDVEALKKLNKDKKLV
KKLAKKYDGFVASDTLIKQIPRLLGPGLNKAGKFPTMVTHTEKLTDKINE
MKSTIKFQMKKVLCLAVAVGHVEMSDDEMAQNIFLAVNFLVSLLKKNWQN
VRSLHXLLGCQLFGFSSEEKLAKRSISPRQEYYGKTPQIVLNQLAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029992XLOC_029992Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047008TCONS_00047008Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028364Ribosomal_L1/biogenesis
IPR002143Ribosomal_L1
IPR023673Ribosomal_L1_CS
IPR023674Ribosomal_L1-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 24..205
e-value: 1.7E-41
score: 142.1
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 10..205
e-value: 3.76076E-57
score: 182.384
IPR002143Ribosomal protein L1PIRSFPIRSF002155RPL1p_RPL1a_RPL10e_RPL1ocoord: 1..206
e-value: 5.7E-41
score: 138.3
NoneNo IPR availableGENE3D3.30.190.20coord: 123..206
e-value: 2.5E-10
score: 39.9
NoneNo IPR availableGENE3D3.30.190.20coord: 6..122
e-value: 3.0E-28
score: 97.9
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 117..136
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 4..205

Blast
[Close]
BLAST of TCONS_00047008-protein vs. Swiss-Prot (Human)
Match: RL10A (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.552e-99
Identity = 149/205 (72.68%), Postives = 181/205 (88.29%), Query Frame = 0 
Query:    1 MTSKITREALYECVTAIRTGSTDKKRKFTETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPKLNICVLGDESHCDQAKASGLPWMDVEALKKLNKDKKLVKKLAKKYDGFVASDTLIKQIPRLLGPGLNKAGKFPTMVTHTEKLTDKINEMKSTIKFQMKKVLCLAVAVGHVEMSDDEMAQNIFLAVNFLVSLLKKNWQNVRSLH 205
            M+SK++R+ LYE V  +  G+  K+RKF ETVELQI LKNYDPQKDKRFSGTV+LK+ PRPK ++CVLGD+ HCD+AKA  +P MD+EALKKLNK+KKLVKKLAKKYD F+AS++LIKQIPR+LGPGLNKAGKFP+++TH E +  K++E+KSTIKFQMKKVLCLAVAVGHV+M+DDE+  NI LAVNFLVSLLKKNWQNVR+L+
Sbjct:    1 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALY 205
The following BLAST results are available for this feature:
BLAST of TCONS_00047008-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL10A1.552e-9972.6860S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
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