TCONS_00047017-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047017-protein
Unique NameTCONS_00047017-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047017-protein ID=TCONS_00047017-protein|Name=TCONS_00047017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp
MDVTKNNFKEAYCMLEKSLPNADFVSIDAEFSGLSTIKGPRYSYNTLEEN
YLKTKKGSEHFLILQYGICLFTWNEENNRYTAFPFTFNVYPRPYKRYFND
VMFMVQSSCLDFLSQNNFDFNKLFYEAISFVHPSTEKKVKDKYDNATKII
NKKDSRASANEEKPAIQAVPKEESKVFIPKDKREFMGKIITMVEEFVVDC
AKSSLDLPTCNPFERKLIYEILEERYPMGLYLQSEMNEKKEKYVRVVKIT
EKGKSMKFQEGLLQESEFYNQTNAFNLVMKLLVQAQKPIIGHNMYLDMFY
TCANFLASPPDCLSEYKLLLNGLFPVIFDTKVISSTSPLSGMLTKGTGLK
NLTESIGVDLVPCELDFDEYVDDKINTEASYHDAGFDALSTGKCFISLIK
SLMLHFDKGDGRIQMDGNLLKPFQNRIFVMGINDINYVTVHKEDQMPSRR
GIYLVTFPPEWKETDLHNLFSPICKIFANIVWVNDTSAYVSLQDKTKHEQ
VIEQYVKNKKHSNIFQIIPFPEQNNGTEDDTNETAAPETSSTKRKLISYQ
ESDPEDGEISSDDEEDSKSPKNSNLTKKSEQEPKAKKQAMFNVSEDW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029998XLOC_029998Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047017TCONS_00047017Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR014789PolyA-riboNase_RNA_binding
IPR012337RNaseH-like_dom
IPR001374R3H_dom
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0004535poly(A)-specific ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006402mRNA catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006402 mRNA catabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 3..395
e-value: 1.1E-67
score: 228.4
IPR014789Poly(A)-specific ribonuclease, RNA-bindingPFAMPF08675RNA_bindcoord: 443..514
e-value: 5.1E-16
score: 58.4
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..412
e-value: 7.4E-63
score: 211.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 1..131
coord: 271..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..597
IPR001374R3H domainPROSITEPS51061R3Hcoord: 183..250
score: 10.476
IPR001374R3H domainSUPERFAMILY82708R3H domaincoord: 176..257
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 437..505

Blast
[Close]
BLAST of TCONS_00047017-protein vs. Swiss-Prot (Human)
Match: PARN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.718e-94
Identity = 178/530 (33.58%), Postives = 293/530 (55.28%), Query Frame = 0 
Query:    1 MDVTKNNFKEAYCMLEKSLPNADFVSIDAEFSGLSTIKGPRYS-----YNTLEENYLKTKKGSEHFLILQYGICLFTWNEENNRYTAFPFTFNVYPRPYKRYFNDVMFMVQSSCLDFLSQNNFDFNKLFYEAISFVHPSTEKKVKDKYDNATKIINKKDSRASANEEKPAIQAVPKEESK--VFIPKDKREFMGKIITMVEEFVVDCAKSSLDLPTCNPFERKLIYEILEERYPMGLYLQSEMNEKKEKYVRVVKITEKGKSMKFQEGLLQESEFYNQTNAFNLVMKLLVQAQKPIIGHNMYLDMFYTCANFLASPPDCLSEYKLLLNGLFPVIFDTKVISSTSPLSGMLTKGTGLKNLTESIG-VDLVPCELDFDEYVDDKINTEASYHDAGFDALSTGKCFISLIKSLMLHFDKGDGRIQMDGNLLKPFQNRIFVMGINDINYVTVHKEDQMPSRRGIYLVTFPPEWKETDLHNLFSPICKIFANIVWVNDTSAYVSLQDKTKHEQVIEQYVKNKKHSNIFQIIPFPE 522
            M++ ++NFK     + +++  ADF +ID EFSG+S   GP  S     ++T EE Y K KK S  FL+ Q+G+C F ++  +++Y    F F V+P+P+ R   DV F+ QSS +DFL+   FDFNK+F   I +++   E++++++YD         + R+ AN    A+  V    SK  V IP+D+++F+ +++  +E+ +      +LDL  C  F+RKLIY+ L  +YP G+++++   EKKE+Y+ + K+ E+ +  + Q+   +E E  N    F+ V+  +  + K +IGHNM LD+ +T   F    P  LSE+K +   +FP + DTK+++ST P   ++   T L  L + +      P +++  E            H+AG+DA  TG CFIS+   L          +     L++PF N++F+M + DI Y+ +   D  P R  +  VTFP EWK +DL+ LFS    I   I W++DTSA+VSL   ++ EQV +  V   K++  ++I  + E
Sbjct:    1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGIS--DGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---------EKRSQANGAG-ALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNI--QISWIDDTSAFVSL---SQPEQV-KIAVNTSKYAESYRIQTYAE 511
The following BLAST results are available for this feature:
BLAST of TCONS_00047017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PARN2.718e-9433.58Poly(A)-specific ribonuclease PARN OS=Homo sapiens... [more]
back to top