TCONS_00047068-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047068-protein
Unique Name	TCONS_00047068-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	566

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047068-protein ID=TCONS_00047068-protein|Name=TCONS_00047068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
FLCVLTYNTAGNIGSFYSFKMDQILFLLGDSEMKSLLSTRRNSPTPSRKV
STPGRDYQSPTTSNHKRHKSVPNTAGVTPVWYASVVDELKRREEENKIHT
IDEQKAGCEKMGTEWKLDSQLRASLERIEKIVFKLQDSENGVPITNAKAL
FHTIPNVCTGADIVTWLKNDLELKTRAEALNVARTIAKYGYIFVASDSKL
TVKDDLTHHRFQHEFFWPTKERAISNSDYAVHLCKRLFSNKNRSNLEVYE
MDQFTRLQRHLGHKWEHIWVQAEASYKVDKKKSKAEQYVIESQERAFWNL
HKPPPYSDYVLAADPLKFKKNATTEAITPLSPDRAASTPSILRRHSVDSL
RDDAMKLGTALQKAEAPKAVESLISYCMQYNKFDPLLRQPSTTSSNSAFY
TEESNNSNDASRRGSQQVERWAISLEELLRDKEGVLVFLKHLEKEHSSEN
LRFWLACEEYKACPLKKVPEKAEQIYKEYLSRSAFYQVNLDSKLMVDVEE
GMKNPNHFTFRAAQHEIFRLMRSDSYPRFLKSENFVMLSKEANSPSHKGQ
EKKGILSILTSPQHKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030008	XLOC_030008	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047068	TCONS_00047068	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016137	RGS
IPR000591	DEP_dom
IPR024066	RGS_subdom1
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0035556	intracellular signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035556	intracellular signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016137	RGS domain	PRINTS	PR01301	RGSPROTEIN	coord: 471..494 score: 38.32 coord: 513..532 score: 60.87 coord: 421..442 score: 40.61 coord: 443..461 score: 59.27
IPR016137	RGS domain	SMART	SM00315	RGS_3	coord: 424..539 e-value: 4.3E-39 score: 145.9
IPR016137	RGS domain	PFAM	PF00615	RGS	coord: 424..535 e-value: 2.7E-31 score: 108.2
IPR016137	RGS domain	PROSITE	PS50132	RGS	coord: 424..535 score: 30.959
IPR016137	RGS domain	SUPERFAMILY	48097	Regulator of G-protein signaling, RGS	coord: 413..536
IPR000591	DEP domain	SMART	SM00049	DEP_3	coord: 138..213 e-value: 3.3E-13 score: 59.9
IPR000591	DEP domain	PFAM	PF00610	DEP	coord: 141..205 e-value: 7.3E-11 score: 41.9
IPR000591	DEP domain	PROSITE	PS50186	DEP	coord: 138..213 score: 15.52
IPR024066	RGS, subdomain 1	GENE3D	1.10.196.10		coord: 510..538 e-value: 2.1E-10 score: 40.0
IPR024066	RGS, subdomain 1	GENE3D	1.10.196.10		coord: 414..457 e-value: 5.8E-14 score: 51.6
None	No IPR available	GENE3D	1.10.167.10		coord: 458..509 e-value: 2.9E-21 score: 74.9
None	No IPR available	GENE3D	4.10.260.10		coord: 227..397 e-value: 8.8E-4 score: 18.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..566
None	No IPR available	CDD	cd04450	DEP_RGS7-like	coord: 130..217 e-value: 2.38478E-18 score: 79.6417
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 107..218 e-value: 4.8E-18 score: 64.6
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 126..219

Blast

[Close]

BLAST of TCONS_00047068-protein vs. Swiss-Prot (Human)
Match: RGS6 (Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1 SV=5)

HSP 1 Score: 299.286 bits (765), Expect = 2.046e-95
Identity = 177/451 (39.25%), Postives = 258/451 (57.21%), Query Frame = 0

Query:  127 RIEKIVFKLQDSE-NGVPITNAKALFHTIPNVCTGADIVTWLKNDLELKTRAEALNVARTIAKYGYIFVASDSKLTVKDDLTHHRFQHEFFWPTKERAISNSDYAVHLCKRLFSNKNRSNLEVYEMDQFTRLQRHLGHKWEHIWVQAEASYKVDKKKSKAEQYVIESQERAFWNLHKPPPYSDYVLAAD---------PLKFKKN--ATTEAITPLSPDRAASTPSILRRHSVDSLRDDAMKLGTALQK--AEAPKAVESLISYCMQYNKFDPLLR--QPST--TSSNSAFYTEESNNSNDASRRGSQQ-VERWAISLEELLRDKEGVLVFLKHLEKEHSSENLRFWLACEEYKACPLKKVPEKAEQIYKEYLSRSAFYQVNLDSKLMVDVEEGMKNPNHFTFRAAQHEIFRLMRSDSYPRFLKSENF--VMLSKEANSPSHKGQEKKGIL 556
            +IE I+ K+QD +  GVPI   K+    IP+V TG DIV WL  +L ++   EA+++   IA  GYIF  SD  LT+KDD T +RFQ  +FWP+      N+DYA++LCKR   NK R  L  YE +   RLQR    KWE I++QAEA  K+D+KK K E+ +++SQERAFW++H+P P        D         P K KK+    TE     SP    S P  +R+ + + +R     L   + +   +  K  ESLI+Y  QY ++DPL+   +PS    S + A +  E       S+  SQQ V+RW  S +E+L+D+ G   FL+ LE E SSENLRFWLA ++ K  PL+ V ++ E+I++E+L+  A   +NLDS       + +K+   +TF  AQ  I++LM+SDSY RFL+S  +  ++L+K+    S  G+   G++
Sbjct:   28 KIEDIITKMQDDKTGGVPIRTVKSFLSKIPSVVTGTDIVQWLMKNLSIEDPVEAIHLGSLIAAQGYIFPISDHVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARLELADYEAENLARLQRAFARKWEFIFMQAEAQVKIDRKKDKTERKILDSQERAFWDVHRPVPGCVNTTEMDIRKCRRLKNPQKVKKSVYGVTEESQAQSPVHVLSQP--IRKTTKEDIRKQITFLNAQIDRHCLKMSKVAESLIAYTEQYVEYDPLITPAEPSNPWISDDVALWDIE------MSKEPSQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKKKGK-SLAGKRLTGLM 469

The following BLAST results are available for this feature:

BLAST of TCONS_00047068-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047068-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RGS6	2.046e-95	39.25	Regulator of G-protein signaling 6 OS=Homo sapiens...	[more]

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TCONS_00047068-protein (polypeptide) - C. hemisphaerica