TCONS_00047071-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047071-protein
Unique Name	TCONS_00047071-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	443

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047071-protein ID=TCONS_00047071-protein|Name=TCONS_00047071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MVGGRKVFHWNTINSGKCENIPKDQILENLMKKYDNFLLPQKDTSESVPV
GVSLYVLDMNPLKNDKLYDHYFADIIIQQIWYDFRLQYQEFSNETITVDG
AFENNIWQPDTRILTEKRSYPVEITKKNVQLTLHPNGTVFTSRRTRSMNF
CSMNYSTFPFDSQICEFRLEAFSYSNDYVDLHWLNRDEPEKNLVFARDLQ
IEQLQLEHFQVYGESFHYAGNGSGTHEQLVVNFHFKRPISFYLIRLYLPN
LITVVLSWTAFWVDYRSLSARVTIGITTVLTINELRLNIYKDDASAGRYL
NLYDTYSFVCFLFVFAALIEYSIAQSIDIKYRLRDFYKAQQSMNPGQDGL
DYEDTVEQNITGASSNDQEQVPKRHFKRLEKFSFDYIDYQHSIVRDKYHA
LDKISQYVFPLTFLIINVVYAGVVVYTRRLDSERVAGFVKVVM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030009	XLOC_030009	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047071	TCONS_00047071	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006028	GABAA/Glycine_rcpt
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 268..289 score: 41.91 coord: 303..324 score: 44.09 coord: 242..262 score: 45.01 coord: 404..424 score: 36.41
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 233..245 score: 31.57 coord: 72..88 score: 31.27 coord: 105..116 score: 36.05 coord: 151..165 score: 46.64
None	No IPR available	GENE3D	1.20.58.390		coord: 243..432 e-value: 3.5E-27 score: 94.6
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 18..242 e-value: 4.7E-40 score: 136.8
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 24..237 e-value: 5.9E-35 score: 120.6
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 23..237
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 246..325 e-value: 3.9E-10 score: 40.1
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 241..427

Blast

[Close]

BLAST of TCONS_00047071-protein vs. Swiss-Prot (Human)
Match: GBRR2 (Gamma-aminobutyric acid receptor subunit rho-2 OS=Homo sapiens GN=GABRR2 PE=2 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 1.636e-50
Identity = 111/400 (27.75%), Postives = 202/400 (50.50%), Query Frame = 0

Query:   47 SVPVGVSLYVLDMNPLKNDKLYDHYFADIIIQQIWYDFRLQYQEFSNETITVDGAFENNIWQPDTRILTEKRSYPVEITKKNVQLTLHPNGTVFTSRRTRSMNFCSMNYSTFPFDSQICEFRLEAFSYSNDYVDLHWLNRDEPEKNLVFARDLQIEQLQLEHFQVYGESFHYAGNGSGTHEQLVVNFHFKRPISFYLIRLYLPNLITVVLSWTAFWVDYRSLSARVTIGITTVLTINELRLNIYKDDASAGR--YLNLYDTYSFVCFLFVFAALIEYSIAQSIDIKYRLRDFYKAQQSMNPGQDGLDYEDT--VEQNITGASSNDQEQVPKRHF----KRLEKFSFDY-IDYQHSIVRDK--------------YHALDKISQYVFPLTFLIINVVYAGV 423
            ++PVGV + V  ++ +    +   +   + ++  W D RL +   SN+++T DG     IW PD   +  KRS+  + T  N+ L + P+G V  S R      C+M++S FP DSQ C   LE+++Y+++ + L+W N DE  K       + + Q  ++ F        Y+   +G + +L +NF  +R I F+L++ Y P  + V+LSW +FW+D R++ ARV++GITTVLT+  +   +   +AS  R  Y+   D Y +V F+FVF +++EY+    +      ++  +  +   P   G+ +  T  ++ + + + +N     P+ H     +R +K      +  + +  R K               HA+DK S+ +FP +++  N++Y  V
Sbjct:   76 AIPVGVDVQVESLDSISEVDM--DFTMTLYLRHYWKDERLAFSSASNKSMTFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKT---DEKISLSQFLIQKFHTTSRLAFYS--STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGV---NASMPRVSYVKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKE--RKLREKFPCMCGMLHSKTMMLDGSYSESEANSLAGYPRSHILTEEERQDKIVVHLGLSGEANAARKKGLLKGQTGFRIFQNTHAIDKYSRLIFPASYIFFNLIYWSV 463

The following BLAST results are available for this feature:

BLAST of TCONS_00047071-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047071-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR2	1.636e-50	27.75	Gamma-aminobutyric acid receptor subunit rho-2 OS=...	[more]

You are here

TCONS_00047071-protein (polypeptide) - C. hemisphaerica