TCONS_00047100-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047100-protein
Unique NameTCONS_00047100-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length155

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047100-protein ID=TCONS_00047100-protein|Name=TCONS_00047100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MADRLTQLQDQVNKLAECFCDSIGVIQQTAHPNNQQQQQQPPQQQTNENN
KPIDPNNPPDPQQPEENYSQFFASMIARTVKDIDHLIDALPSEKSTTELQ
MKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTSG
KISDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030029XLOC_030029Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047100TCONS_00047100Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..135
NoneNo IPR availableGENE3D1.20.120.330coord: 1..147
e-value: 2.4E-4
score: 20.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..68
NoneNo IPR availableSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 2..137
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..140
e-value: 2.2E-31
score: 109.0

Blast
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BLAST of TCONS_00047100-protein vs. Swiss-Prot (Human)
Match: MED21 (Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.304e-35
Identity = 71/149 (47.65%), Postives = 89/149 (59.73%), Query Frame = 0 
Query:    1 MADRLTQLQDQVNKLAECFCDSIGVIQQTAHPNNQQQQQQPPQQQTNENNKPIDPNNPPDPQQPEENYSQFFASMIARTVKDIDHLIDALPSEKSTTELQMKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTS 149
            MADRLTQLQD VN LA+ FC++IGV+QQ            PP    N         N   P  P E Y+Q FA++IART KDID LID+LPSE+ST  LQ  SL +LE EN  A   L+  V  G+ LLE+I+SA + IA + L +R+ 
Sbjct:    1 MADRLTQLQDAVNSLADQFCNAIGVLQQCG----------PPASFNNIQTAI----NKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSG 135
The following BLAST results are available for this feature:
BLAST of TCONS_00047100-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED211.304e-3547.65Mediator of RNA polymerase II transcription subuni... [more]
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