TCONS_00047108-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047108-protein
Unique NameTCONS_00047108-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047108-protein ID=TCONS_00047108-protein|Name=TCONS_00047108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MGGCVSRTDGTRSSSAGGQFGTGGNPAAVTIGKNKPLSGDRPKWQSETAI
TMGQLRSKRDEYWETQPAFDGRREIWDALRAACETEDQALAQAIVDGANI
TLPTGSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKXQPI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030033XLOC_030033Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047108TCONS_00047108Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032752UBD
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043130 ubiquitin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032752Ubiquitin-binding domainPFAMPF16455UBDcoord: 34..133
e-value: 3.2E-33
score: 114.0

Blast
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BLAST of TCONS_00047108-protein vs. Swiss-Prot (Human)
Match: UBTD2 (Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.054e-48
Identity = 77/151 (50.99%), Postives = 101/151 (66.89%), Query Frame = 0 
Query:    1 MGGCVSRTDGTRSSSAGGQFGTGGNPAAVTIGKNKPLSGDRPKWQSETAITMGQLRSKRDEYWETQPAFDGRREIWDALRAAC---ETEDQALAQAIVDGANITLPTGSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKXQP 148
            MGGCV     +  S      GTG     V +G+N+PL  ++PKW+S+  +T GQLRSKRDE+W+T PAF+GR+EIWDAL+AA    E+ D  LAQAI+DGANITLP G+L + YDELGN Y +PVYC++ P N+I    +  T D  +  P
Sbjct:    1 MGGCVGAQHDSSGSLNENSEGTG-----VALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPEPPP 146
The following BLAST results are available for this feature:
BLAST of TCONS_00047108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBTD21.054e-4850.99Ubiquitin domain-containing protein 2 OS=Homo sapi... [more]
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