paired-like homeodomain protein (polypeptide) - C. hemisphaerica

Overview
Namepaired-like homeodomain protein
Unique NameTCONS_00047278-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047278-protein ID=TCONS_00047278-protein|Name=paired-like homeodomain protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MGELSDDQDSYKNRYPNGKRKQRRYRTTFSQIQLDELERAFEKTHYPDVF
MREELAMRINLTEARVQVWFQNRRAKWRKREKLSFNMQPGQPGTGMPNCD
VTNPYIPTSPKLGQQGQQQRGPFSSHLPTPLSHHSPYQSWGQSYYPQATS
PYPQYPEYQQNTQMTTAGTFGRQVAGYPYHNNNNGISRLNSSNEDMTQDP
TASYGSQSSFANLKAPTGGSQLIYA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030117XLOC_030117Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047278TCONS_00047278Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 22..84
e-value: 2.0E-28
score: 110.4
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 23..79
e-value: 4.8E-24
score: 83.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 20..80
score: 21.151
NoneNo IPR availableGENE3D1.10.10.60coord: 16..90
e-value: 2.1E-33
score: 113.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00086homeodomaincoord: 23..81
e-value: 4.3427E-25
score: 93.462
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 55..78
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 18..85

Blast
[Close]
BLAST of paired-like homeodomain protein vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.134e-33
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = 0 
Query:    4 LSDDQDSYKNRYPNGKRKQRRYRTTFSQIQLDELERAFEKTHYPDVFMREELAMRINLTEARVQVWFQNRRAKWRKREK 82
            LS   DS +      KRKQRRYRTTF+  QL+ELERAF+KTHYPDVF REELAMR++LTEARVQVWFQNRRAKWRKREK
Sbjct:  313 LSAGSDSEEGLL---KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
The following BLAST results are available for this feature:
BLAST of paired-like homeodomain protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARX1.134e-3375.95Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S... [more]
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