TCONS_00047431-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047431-protein
Unique NameTCONS_00047431-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047431-protein ID=TCONS_00047431-protein|Name=TCONS_00047431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MASADVGDNVSSKLFFCHVCSQEVGATEDLTCAICSSGAIEELETINTSQ
EPTQNQEHDEQDDFVSFWDNMSRGRRRRAHSYGLRQSTNQIPRRRPQVMV
HIGSPNNSFQMHSTSSGGPDLDMFVQQLFGNLGVQFSRNGFSAMPMGGNG
MGFAGNLGDYAWGPSGLDNIITQLLNQLDNSGPPPAERTKIDSLPIYEIT
QKDLDEKSECAVCQDQFQLSEKVKQLPCKHNFHTPCIEPWLEMHDSCPIC
RMNLNGERSRDDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030210XLOC_030210Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047431TCONS_00047431Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 210..250
e-value: 1.1E-7
score: 41.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 209..251
e-value: 9.1E-13
score: 48.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 210..251
score: 12.622
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 209..251
e-value: 1.87941E-11
score: 56.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..66
e-value: 0.14
score: 11.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 186..259
e-value: 1.2E-18
score: 65.8
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 190..254

Blast
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BLAST of TCONS_00047431-protein vs. Swiss-Prot (Human)
Match: RN115 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.010e-47
Identity = 96/263 (36.50%), Postives = 135/263 (51.33%), Query Frame = 0 
Query:   15 FFCHVCSQEVGAT-EDLTCAICSSGAIEELE----------------TINTSQEPTQNQEHDEQ-DDFVSFWDNMSRGRRRRAHSYGLRQSTNQIPRRRPQVMVHIGSPNNSFQMHSTSSGGPDLDMFVQQLFGNLGVQFSRNGFSAMPMGGNGMGFAGNLGDYAWGPSGLDNIITQLLNQLDNSGPPPAERTKIDSLPIYEITQKDLDEKSECAVCQDQFQLSEKVKQLPCKHNFHTPCIEPWLEMHDSCPICRMNLNGERS 259
            FFCH C  EV     +  C  C SG IEE+                 T     E   + +H     DF  F  +    +  RA+  G +  T+    R P++ +     +        S   P ++  +Q +F       +  G S  P   +GM    N GDYAWG +GLD I+TQLL QL+N+GPPPA++ KI SLP   +TQ+ +D   EC VC++ + + E+V+QLPC H FH+ CI PWLE+HD+CP+CR +LNGE S
Sbjct:   20 FFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRS---PAIEGILQHIFAGFFANSAIPG-SPHPFSWSGM-LHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 277
The following BLAST results are available for this feature:
BLAST of TCONS_00047431-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1153.010e-4736.50E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens... [more]
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