TCONS_00047467-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047467-protein
Unique Name	TCONS_00047467-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	658

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047467-protein ID=TCONS_00047467-protein|Name=TCONS_00047467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp
MVSKNHHHRRIHFAPDHHTHSRSLLTRNEVMKPAHIFRDQVNTVAQWFDQ
WNDIEQTIACYSLLKRLGPTQARFLSLVLDHTFRDSASEVQILEEEANGK
EFLDSLCHESKEIAVQQLLLHLPLLHPGNDEVRHEYLNILPKILSHSLEY
SIHEEECRQLLSLALVHPAFVPEERNSLTWWLGLLEDRGEKMREKRQRPP
PGFNQHSPLSGTKSACELWGNTTQYSHAPVTNTLSYKTTLAPNGFKGQPP
LAHTDSGISTSFDNGPVGLTYPVTKGYRGDNDNEESRTRSKSFPVDPANM
HMPLSPQSSVDSDDENSLRKMNSYVGENFHPGMKDVQMWLKSLRLHKYSH
IFTDITYDQMLNLTEDFLESKDVTKGARNKIILCIQKIKERKKLLLQLEK
EVLQIGKLPYVLNELKSILMSPIKTPEHRKTGLEGEITGKPSFSEEDEDK
IANTEDDGENKENEAETALTAVSSNTETNTENSVHKTTDENTPSEAEEDL
PSEIVRVMGKACTQILVTQPDEECCLTYLGLLERVLTHEAFSQNDKRRMQ
SWKVQCQKLARQLAMNRKLGSIEKGPKNWYDPLGSGSLARPRRPTNRTNS
LKSGTIPQCGRAGPLVAAQNIHKKLGHTNSYHSSVEVCSWVTKIQKESTK
AWNRFVSV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030235	XLOC_030235	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047467	TCONS_00047467	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR015327	PHAT_dom
IPR013761	SAM/pointed

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 444..464
None	No IPR available	GENE3D	1.10.150.50		coord: 331..395 e-value: 1.8E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 581..604
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	CDD	cd09557	SAM_Smaug	coord: 330..390 e-value: 6.18055E-33 score: 120.51
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 329..391 e-value: 5.9E-8 score: 42.4
IPR001660	Sterile alpha motif domain	PFAM	PF00536	SAM_1	coord: 333..389 e-value: 1.2E-7 score: 31.9
IPR015327	Smaug, pseudo-HEAT analogous topology	GENE3D	1.25.40.170		coord: 396..559 e-value: 4.6E-35 score: 120.3
IPR013761	Sterile alpha motif/pointed domain	SUPERFAMILY	47769	SAM/Pointed domain	coord: 332..389

Blast

[Close]

BLAST of TCONS_00047467-protein vs. Swiss-Prot (Human)
Match: SMAG2 (Protein Smaug homolog 2 OS=Homo sapiens GN=SAMD4B PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 7.449e-94
Identity = 211/558 (37.81%), Postives = 288/558 (51.61%), Query Frame = 0

Query:   36 IFRDQVNTVAQWFDQWNDIEQTIACYSLLKRLGPTQARFLSLVLDHTFRDSASEVQILEEEANGKEFLDSLCHESKEIAVQQLLLHLPLLHPGNDEVRHEYLNILPKILSHSLEYSIHEEECRQLLSLALVHPAFVPEERNSLTWWLGLLEDRGEKMREKRQRPPPGFNQHSPLSGTKSACELWGNTTQYSHAPVTNTLSYKTTLAPNGFKGQPPLAHTDSGISTSFDNGPVGLT--------------YPVTKGYRGDNDNEESRTRSKSFPVDPANMHMPLSPQSSVDSDDENSLRKMNSY--VGENFHPGMKDVQMWLKSLRLHKYSHIFTDITYDQMLNLTEDFLESKDVTKGARNKIILCIQKIKERKKLLLQLEKEVLQIGKLPYVLNELKSILMSPIKT-------------PEHRKTGLEGEITGKPSFSEEDEDKIANTEDDGENKENEAETALTAVSSNTETNTENSVHKTTDENTPSE---AEEDLPSEIVRVMGKACTQILVTQPDEECCLTYLGLLERVLTHEAFSQNDKRRMQSWKVQCQKLAR 561
            +FRDQV  +A WF  WN+ EQT+A  SLLKR+  TQARFL L L+H+  D  +++ +LE EAN    +     ESKE  V  LL HLPLL PGN E + EY+ +L K+L++S+E +   EE RQLLS AL+HPA   E+RN+L  WL  LE+R       R RP P ++       ++   + WG   +            K     NG     P +     I++   N   GL                P +    G+  + E      +F       H PLSPQSSV S       +  S     +    GMKDV  WLKSLRLHKY+ +F+ ++Y++M+ LTE  LES++VTKGAR+KI L IQK++ER+ +L  LEK+VL+ G L   L EL+ I+++PIK                  K G  GE    P    E       T+   E K+  A           E          TD + P+    A+ D+PS+  RVMGK CTQ+LV++PDEE   +YL L+E+ LTHEAF++  K+R+ SWK Q  KL R
Sbjct:    2 MFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLAD-CNDIHLLESEANSAAIVSQWQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIEESRQLLSYALIHPATTLEDRNALALWLSHLEER--LASGFRSRPEPSYH-------SRQGSDEWGGPAELGPGEAGPGWQDKPPRE-NGHVPFHPSSSVPPAINSIGSNANTGLPCQIHPSPLKRSMSLIPTSPQVPGEWPSPEELGARAAFTTP---DHAPLSPQSSVASSGSEQTEEQGSSRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIALSIQKLRERQSVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATVAAATTTPTAKDGAPGE---PPLPGAEPPLAHPGTDKGTEAKDPPA----------VENYPPPPAPAPTDGSEPAPAPVADGDIPSQFTRVMGKVCTQLLVSRPDEENITSYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLR 532

The following BLAST results are available for this feature:

BLAST of TCONS_00047467-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMAG2	7.449e-94	37.81	Protein Smaug homolog 2 OS=Homo sapiens GN=SAMD4B ...	[more]

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TCONS_00047467-protein (polypeptide) - C. hemisphaerica