TCONS_00047630-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047630-protein
Unique NameTCONS_00047630-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047630-protein ID=TCONS_00047630-protein|Name=TCONS_00047630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MGKTIRHRDENDGDSSDESDIIKLINRKSSTIKKKKKKKLKKKRRVKTVR
TLFVSGLPMDTKPREIYLMFRGFKGYQSSLLKLTGKEGKKATPVAFVTFE
TREQAETTKSELQGVRFDPELATTIRIEFAKANTKVSNPVLKPATATSMV
LPGIPSPTFPANAFDLAAAGLFAHADPTNWPTSTANFTDLNGNHLTALPQ
QHLHPGLTTAVPHSAFDRLATLSCSLPLTAPVSIANQGHHLIHNPILNNV
AASDAANACTTLFVANLGSGTTEDELKASFCRFPTFRRIKMLRNKNTAPV
AFVEYGEVLYALHAKTYFQGGLLPSSENGGMRIEFAKNKMGETGKRMDGQ
PEIIAQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030338XLOC_030338Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047630TCONS_00047630Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 51..128
e-value: 9.1E-5
score: 31.8
coord: 261..334
e-value: 1.6E-7
score: 41.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 262..322
e-value: 1.4E-8
score: 34.4
coord: 52..117
e-value: 8.9E-10
score: 38.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 50..132
score: 11.639
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 260..338
score: 11.128
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 47..136
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 256..348
NoneNo IPR availableGENE3D3.30.70.330coord: 3..139
e-value: 6.8E-14
score: 51.4
NoneNo IPR availableGENE3D3.30.70.330coord: 256..352
e-value: 5.5E-11
score: 42.0

Blast
[Close]
BLAST of TCONS_00047630-protein vs. Swiss-Prot (Human)
Match: RBPMS (RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.560e-33
Identity = 79/193 (40.93%), Postives = 106/193 (54.92%), Query Frame = 0 
Query:   49 VRTLFVSGLPMDTKPREIYLMFRGFKGYQSSLLKLTGKEGKKATPVAFVTFETREQAETTKSELQGVRFDPELATTIRIEFAKANTKVSNPVLKPATATSMVLPGIPSPTFPA-NAFDLAAAGLFAHADPTNWPTSTANFTDLNGNHLTALPQQHLHPG-LTTAVPHSAFDRLATLSCSLPLTAPVSIANQGH 239
            VRTLFVSGLP+D KPRE+YL+FR FKGY+ SL+KLT K+     PV FV+F++R +AE  K+ L G+RFDPE+  T+R+EFAKANTK++   L      S  LP    P F A   ++L    L+  + P  W    A +               L+P  L  A+P  AF   A+L   +    P    +QG 
Sbjct:   23 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNT-VPQFIAREPYELTVPALYP-SSPEVW----APYP--------------LYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGW 190
The following BLAST results are available for this feature:
BLAST of TCONS_00047630-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBPMS1.560e-3340.93RNA-binding protein with multiple splicing OS=Homo... [more]
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