TCONS_00047644-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047644-protein
Unique NameTCONS_00047644-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047644-protein ID=TCONS_00047644-protein|Name=TCONS_00047644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
MVVEVDQKNVKAALKDDVKEVAKITKKQPDPKDLLPVSLLCGFLGAGKTT
LLKHILETKHNEEGFRCAVIVNDMATLNIDKSLIDQSALVQSDEVIAMQN
GCFCCTLQNDLVDQIVSLAQKNIFDYMLIEASGVSEPAQIAPLFDLCEDE
HDHEEEHPEGPELGEVARLDTCVTVIDAAEFYNNLESMKMYEEGDMVGTI
SELLMEQVEYSNVVILNKQDLINDKQRADILDRIKILNPRAKVLSSLQSK
VDVKEILNTNLYNKVEMDEDSVMCSATRIKAESNEVEPECCVKSVESGKK
KCCKSKKAENKQIIDSGKSQLFLGVVDKIAGQKQLTRHEERFGITSFVYR
SRRPFHSGRLCGLFFEPFFIMRYEEEENELDELQKKAANKQKRRVKKIGE
LLRAKGFMWLATSHEILGGFQQAGNVVRVEAEGNWMVDCRDQWEGEEGEE
RVLKDMTNEKGEEYEYGDRRQELVFIGMTLKYQTIQKILDECLLTDDEMK
LGPEKWLEQFGEDAPLRLFLVEDEEEDSEEDEEEDGEGTDDEETENEDEE
KSEMDEKSSEKTTAPGKKRKVKKDAENNDDEEKKKEIPAKRKKSKKDLDN
E
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030343XLOC_030343Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047644TCONS_00047644Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011629Cbl_biosynth_CobW-like_C
IPR003495CobW/HypB/UreG_dom
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 370..400
NoneNo IPR availableGENE3D3.40.50.300coord: 33..263
e-value: 7.6E-43
score: 146.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 523..601
IPR011629Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminalSMARTSM00833CobW_C_3coord: 344..493
e-value: 1.3E-26
score: 104.4
IPR011629Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminalGENE3D3.30.1220.10coord: 327..494
e-value: 1.2E-21
score: 76.2
IPR011629Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminalPFAMPF07683CobW_Ccoord: 344..493
e-value: 6.7E-19
score: 67.5
IPR011629Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminalSUPERFAMILY90002Hypothetical protein YjiA, C-terminal domaincoord: 401..438
coord: 344..374
coord: 467..493
IPR003495CobW/HypB/UreG, nucleotide-binding domainPFAMPF02492cobWcoord: 36..244
e-value: 2.6E-44
score: 150.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 36..268

Blast
[Close]
BLAST of TCONS_00047644-protein vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.962e-24
Identity = 67/233 (28.76%), Postives = 130/233 (55.79%), Query Frame = 0 
Query:   35 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQNDLVDQIVSLAQ-KNIFDYMLIEASGVSEPAQIAPLFDLCEDEHDHEEEHPEGPELGEVARLDTCVTVIDAAEFYNNLESMKMYEEGDMVGTISELLMEQVEYSNVVILNKQDLINDKQRADILDRIKILNPRAKVLSSLQSKVDVKEILNTNLYNKV 265
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++++ +  I +L Q K  FDY+L+E +G+++P  +A +F +               ELG    LD  +T++D+         +K   E    G I+E    QV  ++ +++NK DL+ ++    +   I+ +N   ++L + +S+VD+  +L+ + ++ +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWV-------------DAELGSDIYLDGIITIVDSK------YGLKHLAEEKPDGLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSL 251
The following BLAST results are available for this feature:
BLAST of TCONS_00047644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBWD25.962e-2428.76COBW domain-containing protein 2 OS=Homo sapiens G... [more]
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